Name
Abstract | ||
|---|---|---|
A new explicit symplectic integration algorithm for molecular dynamics (MD) Simulations is described. The method involves splitting of the total Hamiltonian of the system into the harmonic part and the remaining part in such a way that both parts can be efficiently computed. The Hamilton equations of motion are then solved using the second order generalized leap-frog integration scheme in which the high-frequency motions are treated analytically by the normal mode analysis which is carried out only once, at the beginning of the calculation. The proposed algorithm requires only one force evaluation per integration step, the computation cost per integration step is approximately the same as that of the standard leap-frog-Verlet method, and it allows an integration time step ten times larger than can be used by other methods of the same order. It was applied to MD simulations of the linear molecule of the form H-(C=C)(n)-H and was by an order of magnitude faster than the standard leap-frog-Verlet method. The approach for MD simulations described here is general and applicable to any molecular system. |
Year | DOI | Venue |
|---|---|---|
1995 | 10.1021/ci00024a022 | JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES |
Keywords | Field | DocType |
symplectic integrator | Computational chemistry,Symplectic integrator,Leapfrog integration,Molecular dynamics,Mathematics | Journal |
Volume | Issue | ISSN |
35 | 2 | 0095-2338 |
Citations | PageRank | References |
6 | 0.95 | 3 |
Authors | ||
2 | ||
Name | Order | Citations | PageRank |
|---|---|---|---|
| Dusanka Janezic | 1 | 205 | 34.72 |
| Franci Merzel | 2 | 12 | 3.36 |