Title
Segmentation, Registration, and Deformation Analysis of 3D MR Images of Mice
Abstract
We demonstrate our mouse MR image and shape analysis pipeline. The long term goal of our work is the description of structural shape variations in normal, genetically identical mice and the subsequent detection of pathological phenotypes in genetically modified mice. The pipeline begins with the acquisition and reconstruction of high resolution MR images of mice. Regions of the images containing organs under study are enhanced via edge-preserving smoothing and mouse organs are segmented using a deformable mesh model. Images are registered using a multi-resolution approach and displacement fields are used to calculate local volume changes. Detailed descriptions and results for each step of the pipeline are presented.
Year
DOI
Venue
2003
10.1007/978-3-540-39903-2_107
Lecture Notes in Computer Science
Keywords
Field
DocType
gene regulation,functional genomics,genetics,shape analysis
Computer vision,Mesh model,Mouse Kidney,Pattern recognition,Computer science,Segmentation,Optical projection tomography,Smoothing,Artificial intelligence,Deformation (mechanics),Image registration,Shape analysis (digital geometry)
Conference
Volume
ISSN
Citations 
2879
0302-9743
0
PageRank 
References 
Authors
0.34
6
5
Name
Order
Citations
PageRank
Ghassan Hamarneh11353110.14
Josette Chen2313.89
Brian Neiman300.34
Jeff Henderson461.10
Mark Henkelman5131.99