Name
Abstract | ||
|---|---|---|
The retrieval of useful data from spotted microarray slides requires keeping track of which microplate wells and DNA sample corresponds to each spot on each array slide. Existing approaches are closely coupled with the type of arrayer in use and are computer operating-system-specific. To support the microarray researcher community at large who use different arrayers and computer platforms, increased flexibility, generality, and portability of these approaches are required. In this paper, we describe a general algorithm that correlates the well positions of DNA samples in each microplate to the positions of the spots on each array slide. Based on this algorithm, we have implemented a flexible and platform-independent program named MicroArray Convolutor (MAC) that provides a Web solution allowing the user to: (a) import a text file that identifies the DNA samples and their well locations, (b) select a transformation method that converts data in 96-well plate format into 384-well plate format, and (c) specify the output format of the array lists dependant on the configuration of the array platform as well as the downstream analysis software chosen for the array. MAC and its source code can be accessed via the following Web address: http://ymd.med.yale.edu/kei-cgi/kc_mac_dev8.pl. |
Year | DOI | Venue |
|---|---|---|
2002 | 10.1016/S1532-0464(03)00033-9 | Journal of Biomedical Informatics |
Keywords | Field | DocType |
microplate well,genomics,dynamic approach,output format,convolution,mapping,computer operating-system-specifc,web interface,384-well plate format,96-well plate format,dna sample corresponds,microarray,array platform,web solution,array slide,dna sample,generic algorithm,source code,operating system | Data mining,General algorithm,Source code,Convolution,Computer science,Artificial intelligence,Software portability,User interface,Robotics,DNA microarray,The Internet | Journal |
Volume | Issue | ISSN |
35 | 5-6 | 1532-0464 |
Citations | PageRank | References |
1 | 0.41 | 1 |
Authors | ||
8 | ||
Name | Order | Citations | PageRank |
|---|---|---|---|
| Kei-hoi Cheung | 1 | 664 | 60.65 |
| Janet Hager | 2 | 11 | 1.85 |
| Kenneth Nelson | 3 | 1 | 0.41 |
| K. White | 4 | 101 | 11.43 |
| Yuli Li | 5 | 16 | 3.57 |
| Michael Snyder | 6 | 138 | 26.15 |
| Kenneth Williams | 7 | 166 | 21.56 |
| Perry Miller | 8 | 7 | 1.69 |