Paper Info
Title
Using GBrowse 2.0 to visualize and share next-generation sequence data.
Abstract
GBrowse is a mature web-based genome browser that is suitable for deployment on both public and private web sites. It supports most of genome browser features, including qualitative and quantitative (wiggle) tracks, track uploading, track sharing, interactive track configuration, semantic zooming and limited smooth track panning. As of version 2.0, GBrowse supports next-generation sequencing (NGS) data by providing for the direct display of SAM and BAM sequence alignment files. SAM/BAM tracks provide semantic zooming and support both local and remote data sources. This article provides step-by-step instructions for configuring GBrowse to display NGS data.
Year
DOI
Venue
2013
10.1093/bib/bbt001
BRIEFINGS IN BIOINFORMATICS
Keywords
Field
DocType
bioinformatics,genomics,DNA sequencing,genome browser,data visualization,data sharing
World Wide Web,Panning (camera),Genome browser,Computer science,Upload,Zoom,Software,Data sequences,Bioinformatics,Computer graphics,The Internet
Journal
Volume
Issue
ISSN
14
SP2
1467-5463
Citations 
PageRank 
References 
28
1.52
6
Authors
1
Name
Order
Citations
PageRank
Lincoln D. Stein11555247.25