Name
Abstract | ||
|---|---|---|
We propose a novel set of 'representative' protein chains in PDB, where not only sequential but also structural similarities are taken into account. Hobohm et al. have already proposed "PDB_SELECT", which eliminates redundant chains based solely on sequence similarity. "PDB_SELECT" is frequently updated and the latest version is available at EMBL WWW server. In our set of entries "PDB-REPRDB," however, structural similarities are also considered, in order not to overlook local conformation diversity within a group of sequentially similar chains. Our set guarantees that every representative is the best among that similar protein group, regarding experimental or structure-determination quality (i.e. resolution and R-value). The first version (based on PDB Release 70) of PDB-REPRDB was released in 1995 and the second version (PDB Release 78) will be available by April 1997. |
Year | Venue | Keywords |
|---|---|---|
1997 | ISMB | protein data bank,representative protein chains,sequential and struc- tural similarity,pdb protein data bank,repre- sentative protein chains,structural similarity |
Field | DocType | Volume |
Data mining,Computer science,Bioinformatics,Protein Data Bank,Protein Data Bank (RCSB PDB),Database | Conference | 5 |
ISSN | ISBN | Citations |
1553-0833 | 1-57735-022-7 | 5 |
PageRank | References | Authors |
3.95 | 1 | 4 |
Name | Order | Citations | PageRank |
|---|---|---|---|
| Tamotsu Noguchi | 1 | 146 | 26.12 |
| Kentaro Onizuka | 2 | 33 | 12.78 |
| Yutaka Akiyama | 3 | 172 | 37.62 |
| Minoru Saito | 4 | 5 | 5.31 |