Paper Info
Title
OrysPSSP: a comparative platform for small secreted proteins from rice and other plants.
Abstract
Plants have large diverse families of small secreted proteins (SSPs) that play critical roles in the processes of development, differentiation, defense, flowering, stress response, symbiosis, etc. Oryza sativa is one of the major crops worldwide and an excellent model for monocotyledonous plants. However, there had not been any effort to systematically analyze rice SSPs. Here, we constructed a comparative platform, OrysPSSP (http://www.genoportal.org/PSSP/index.do), involving > 100 000 SSPs from rice and 25 plant species. OrysPSSP is composed of a core SSP database and a dynamic web interface that integrates a variety of user tools and resources. The current release (v0530) of core SSP database contains a total of 101 048 predicted SSPs, which were generated through a rigid computation/curation pipeline. The web interface consists of eight different modules, providing users with rich resources/functions, e.g. browsing SSP by chromosome, searching and filtering SSP, validating SSP with omics data, comparing SSP among multiple species and querying core SSP database with BLAST. Some cases of application are discussed to demonstrate the utility of OrysPSSP. OrysPSSP serves as a comprehensive resource to explore SSP on the genome scale and across the phylogeny of plant species.
Year
DOI
Venue
2013
10.1093/nar/gks1090
NUCLEIC ACIDS RESEARCH
Keywords
Field
DocType
secretory pathway,internet,genomics
Genome,Fight-or-flight response,Biology,Biotechnology,Oryza sativa,Genomics,Computational biology,Genetics,Basic Local Alignment Search Tool,Dynamic web page,Plant species
Journal
Volume
Issue
ISSN
41
D1
0305-1048
Citations 
PageRank 
References 
2
0.38
15
Authors
6
Name
Order
Citations
PageRank
Bohu Pan190.87
Jia Sheng2594.69
Weining Sun320.38
Yinhong Zhao420.38
Pei Hao51098.08
Xuan Li61095.69