Name
Abstract | ||
|---|---|---|
Enlarged FAMSBASE is a relational database of comparative protein structure models for the whole genome of 41 species, presented in the GTOP database. The models are calculated by Full Automatic Modeling System ( FAMS). Enlarged FAMSBASE provides a wide range of query keys, such as name of ORF ( open reading frame), ORF keywords, Protein Data Bank ( PDB) ID, PDB heterogen atoms and sequence similarity. Heterogen atoms in PDB include cofactors, ligands and other factors that interact with proteins, and are a good starting point for analyzing interactions between proteins and other molecules. The data may also work as a template for drug design. The present number of ORFs with protein 3D models in FAMSBASE is 183 805, and the database includes an average of three models for each ORF. FAMSBASE is available at http: / / famsbase. bio. nagoya- u. ac. jp/ famsbase/ |
Year | DOI | Venue |
|---|---|---|
2003 | 10.1093/nar/gkg117 | NUCLEIC ACIDS RESEARCH |
Keywords | Field | DocType |
open reading frame,relational database,enzyme,homology modeling,protein structure,genome,drug design,ligand binding,genome sequence,protein data bank,structural genomics,open reading frames,proteins | Genome,Protein structure database,Structural genomics,Biology,Threading (protein sequence),Genetics,Protein Data Bank,Homology modeling,Protein Data Bank (RCSB PDB),Protein structure | Journal |
Volume | Issue | ISSN |
31 | 1.0 | 0305-1048 |
Citations | PageRank | References |
2 | 0.39 | 3 |
Authors | ||
7 | ||
Name | Order | Citations | PageRank |
|---|---|---|---|
| Akihiro Yamaguchi | 1 | 16 | 2.63 |
| Mitsuo Iwadate | 2 | 10 | 1.38 |
| Ei-Ichiro Suzuki | 3 | 2 | 0.73 |
| Kei Yura | 4 | 13 | 2.70 |
| Shigetsugu Kawakita | 5 | 2 | 0.39 |
| Hideaki Umeyama | 6 | 2 | 0.39 |
| Mitiko Go | 7 | 10 | 1.30 |