Paper Info
Title
NACST/Seq: A Sequence Design System with Multiobjective Optimization
Abstract
The importance of DNA sequence design for reliable DNA computing is well recognized. In this paper, we describe a DNA sequence optimization system NACST/Seq that is based on a multiobjective genetic algorithm. It uses the concept of Pareto optimization to reflect many realistic characteristics of DNA sequences in real bio-chemical experiments flexibly. This feature allows to recommend multiple candidate sets as well as to generate the DNA sequences, which fit better to a specific DNA computing algorithm. We also describe DNA sequence analyzer that can examine and visualize the properties of given DNA sequences.
Year
DOI
Venue
2002
10.1007/3-540-36440-4_21
DNA
Keywords
Field
DocType
multiple candidate,sequence design system,dna sequence,dna sequence design,multiobjective genetic algorithm,real bio-chemical experiments flexibly,dna sequence analyzer,pareto optimization,multiobjective optimization,dna sequence optimization system,reliable dna computing,specific dna computing algorithm,dna computing
Biology,Sequence design,Multi-objective optimization,Theoretical computer science,DNA sequencing,Multiobjective optimization problem,A-DNA,Genetic algorithm,DNA computing
Conference
Volume
ISSN
ISBN
2568
0302-9743
3-540-00531-5
Citations 
PageRank 
References 
6
0.79
9
Authors
4
Name
Order
Citations
PageRank
Dongmin Kim160.79
Soo-Yong Shin219617.20
In-Hee Lee312810.10
Byoung-Tak Zhang41571158.56