Title
PCR designer for restriction analysis of various types of sequence mutation.
Abstract
Restriction analysis is widely used to detect gene mutations such as insertions, deletions and single nucleotide polymorphisms (SNPs). Although such mutation sites sometimes present some natural restriction sites to differentiate the wild-type and mutant sequences, mismatches are often needed in order to create artificial restriction fragment length polymorphisms (RFLPs). In this report, a computer program is described that screens for suitable restriction enzymes, introducing mismatches where appropriate and when necessary, designs primers using the information of the selected restriction enzymes, their recognition sequence and locations as well as the information about the mismatches if any. The program, supported by a WWW web interface, is intended to be used online.
Year
DOI
Venue
2002
10.1093/bioinformatics/18.12.1688
BIOINFORMATICS
Field
DocType
Volume
Gene,Recognition sequence,Biology,Restriction fragment length polymorphism,Primer (molecular biology),Single-nucleotide polymorphism,Bioinformatics,Genetics,Restriction site,Restriction enzyme,Mutation
Journal
18
Issue
ISSN
Citations 
12.0
1367-4803
1
PageRank 
References 
Authors
0.57
2
3
Name
Order
Citations
PageRank
Xiayi Ke1274.45
A Collins251.81
Shu Ye310.57