Name
Title | ||
|---|---|---|
Massive Multiple Sequence Alignment of 16S Bacterial Ribosomal RNAs Using ClustalW-Message Passing Interface (MPI) Based on Beowulf Linux System |
Abstract | ||
|---|---|---|
We have built a Debian-Beowulf computer cluster consisting of 15 computational nodes, each equipped with 15 AMD Opteron 64 bit microprocessors. Local Area Multicomputer (LAM)Message Passing Interface (MPI) was used as a portable highperformance implementation for MPI. More than 2,000 bacterial 16S ribosomal RNAs (rRNAs) were multiply aligned using ClustalW-MPI. Systematic sequence comparison provided several sequences with a very high degree of homology despite their different origins of species. These highly conservative sequences were collected as candidate sequences for drug targets of ribosomal antibiotics. |
Year | DOI | Venue |
|---|---|---|
2005 | 10.1109/CSBW.2005.88 | CSB Workshops |
Keywords | Field | DocType |
amd opteron,candidate sequence,bacterial ribosomal,computational node,ribosomal antibiotic,beowulf linux system,massive multiple sequence alignment,conservative sequence,debian-beowulf computer cluster,ribosomal rnas,bit microprocessors,message passing interface,local area multicomputer,clustalw-message passing interface,drug targeting,linux,macromolecules,message passing,16s ribosomal rna,ribosomal rna,microorganisms,multiple sequence alignment | Cellular biophysics,Computer science,Ribosomal RNA,Message Passing Interface,Bioinformatics,Multiple sequence alignment,Bacterial 16S,Computer cluster,Message passing | Conference |
ISBN | Citations | PageRank |
0-7695-2442-7 | 0 | 0.34 |
References | Authors | |
2 | 6 | |
Name | Order | Citations | PageRank |
|---|---|---|---|
| Hyon Chang Kim | 1 | 0 | 0.34 |
| Yong Beom Seo | 2 | 0 | 0.34 |
| Ji Hwan Song | 3 | 0 | 0.34 |
| Dong Soon Choi | 4 | 1 | 0.77 |
| Churl K. Min | 5 | 0 | 0.34 |
| Han Jip Kim | 6 | 0 | 0.34 |