Paper Info
Title
Visualization of Lattice-Based Protein Folding Simulations
Abstract
Analysis of the spatial structure of proteins including folding processes is a challenge for modern bioinformatics. Due to limited experimental access to folding processes, computer simulations are a standard approach. Since realistic continuous (all-atom) simulations are far too expensive, lattice based protein folding simulations are a common coarse-graining. In this paper, we present a visualization tool for lattice based protein folding simulations. The system is based on Shneiderman's mantra "Overview first, zoom and filter, details on demand" and uses a collection of information visualization techniques including multiple views, focus+context and table lenses which have been tailored towards our data. We demonstrate the potential of information visualization techniques for providing insight into such simulations.
Year
DOI
Venue
2006
10.1109/IV.2006.127
IV
Keywords
Field
DocType
common coarse-graining,— information visualization,multiple view,multiple views,overview+detail,information visualization technique,visualization tool,limited experimental access,modern bioinformatics,spatial structure,computer simulation,protein folding simulation,folding process,lattice-based protein folding simulations,design guidelines,focus+context.,data visualisation,computational modeling,lattices,computer science,bioinformatics,information visualization,chemicals,proteins,protein folding,data visualization,amino acids,chemistry
Protein folding,Data visualization,On demand,Lattice (order),Information visualization,Visualization,Computer science,Zoom,Theoretical computer science,Computational science,Spatial structure
Conference
ISBN
Citations 
PageRank 
0-7695-2602-0
4
0.52
References 
Authors
9
5
Name
Order
Citations
PageRank
Sebastian Potzsch140.52
Gerik Scheuermann21382112.65
Peter F. Stadler325662.77
Michael T Wolfinger4162.18
Christoph Flamm540.86