Title
On the computational complexity of sequence design problems
Abstract
Inverse protein folding concerns the identification of anamino acid sequence that folds to a given structure. Sequencedesign problems attempt to avoid the apparant difficultyof inverse protein folding by defining an energy thatcan be minimized to find protein-like sequences. We evaluatethe practical relevance of two sequence design problemsby analyzing their computational complexity. We show thatthe canonical method of sequence design is intractable, anddescribe approximation algorithms ...
Year
DOI
Venue
1997
10.1145/267521.267539
RECOMB
Keywords
Field
DocType
sequence design problem,computational complexity,branch and cut,protein folding,computational biology
Inverse,Approximation algorithm,Protein folding,Computer science,Branch and cut,Algorithm,Sequence design,Bioinformatics,Mathematical model,Peptide sequence,Computational complexity theory
Conference
ISBN
Citations 
PageRank 
0-89791-882-7
12
3.89
References 
Authors
0
1
Name
Order
Citations
PageRank
William E. Hart11028141.71