Title
Protein structure alignment using maximum cliques and local search
Abstract
The protein structure alignment problem addresses the question of measuring the degree of similarity, in three-dimensional structure, of two proteins. The representation of each protein using a simple contact map allows the correspondence graph for the protein pair to be generated and the maximum clique within this graph provides a measure of the structural similarity between the two proteins. This study uses a recently developed maximum clique algorithm, Phased Local Search (PLS), to locate the maximum cliques within correspondence graphs.
Year
DOI
Venue
2007
10.1007/978-3-540-76928-6_91
Australian Conference on Artificial Intelligence
Keywords
Field
DocType
local search,structural similarity
Graph,Combinatorics,Degree of similarity,Clique,Structural similarity,Local search (optimization),Mathematics,Protein structure
Conference
Volume
ISSN
ISBN
4830
0302-9743
3-540-76926-9
Citations 
PageRank 
References 
6
0.72
5
Authors
1
Name
Order
Citations
PageRank
Wayne J. Pullan123212.73