Paper Info
Title
Modeling alternate RNA structures in genomic sequences.
Abstract
We introduce the concept of RNA multistructures, which is a formal grammar-based framework specifically designed to model a set of alternate RNA secondary structures. Such alternate structures can either be a set of suboptimal foldings, or distinct stable folding states, or variants within an RNA family. We provide several such examples and propose an efficient algorithm to search for RNA multistructures within a genomic sequence.
Year
DOI
Venue
2015
10.1089/cmb.2014.0272
JOURNAL OF COMPUTATIONAL BIOLOGY
Keywords
DocType
Volume
RNA,dynamic programming,secondary structure,alignment,algorithms
Journal
22.0
Issue
ISSN
Citations 
3
1066-5277
0
PageRank 
References 
Authors
0.34
8
3
Name
Order
Citations
PageRank
Azadeh Saffarian171.28
Mathieu Giraud212415.28
Hélène Touzet329220.96