Paper Info
Title
RNA-Rocket: an RNA-Seq analysis resource for infectious disease research.
Abstract
Motivation: RNA-Seq is a method for profiling transcription using high-throughput sequencing and is an important component of many research projects that wish to study transcript isoforms, condition specific expression and transcriptional structure. The methods, tools and technologies used to perform RNA-Seq analysis continue to change, creating a bioinformatics challenge for researchers who wish to exploit these data. Resources that bring together genomic data, analysis tools, educational material and computational infrastructure can minimize the overhead required of life science researchers. Results: RNA-Rocket is a free service that provides access to RNA-Seq and ChIP-Seq analysis tools for studying infectious diseases. The site makes available thousands of pre-indexed genomes, their annotations and the ability to stream results to the bioinformatics resources VectorBase, EuPathDB and PATRIC. The site also provides a combination of experimental data and metadata, examples of pre-computed analysis, step-by-step guides and a user interface designed to enable both novice and experienced users of RNA-Seq data.
Year
DOI
Venue
2015
10.1093/bioinformatics/btv002
BIOINFORMATICS
DocType
Volume
Issue
Journal
31
9
ISSN
Citations 
PageRank 
1367-4803
0
0.34
References 
Authors
9
19
Name
Order
Citations
PageRank
Andrew S. Warren1514.09
Cristina Aurrecoechea236136.70
B. P. Brunk333742.80
Prerak Desai400.34
Scott J. Emrich58513.27
Gloria I Giraldo-Calderón6141.13
Omar S Harb711610.70
Deborah Hix81028136.87
Daniel Lawson948576.88
Dustin Machi10615.88
chunhong mao1115710.55
M McClelland1210.71
Eric K. Nordberg131038.24
Maulik Shukla141107.97
Leslie B Vosshall1500.34
Alice R Wattam161108.20
Rebecca Will17646.07
Hyun Seung Yoo18473.25
Bruno Sobral19736.06