Name
Abstract | ||
|---|---|---|
Within metagenomics, "Contig Binning" is an important step in the process of reconstructing genomes of species in mixed cultures and environmental samples. We present an interactive visual environment which enables a biologist to statistically analyze the multiple dimensions of data that are typically used during binning, and integrate and compare the results of various binning methods. Our system features a web-based parallel coordinate visualization at the front end and a R server back end for analysis and semi-supervised clustering of contig data. |
Year | DOI | Venue |
|---|---|---|
2014 | 10.1109/VAST.2014.7042506 | IEEE VAST |
Keywords | Field | DocType |
metagenomics,server back end,binning method,pattern clustering,environmental sample,semisupervised clustering,multiple data dimension,genomics,interactive visual environment,biology computing,molecular biophysics,data visualisation,internet,mixed cultures,contig data,metagenomic contig binning,dna,reconstructing genomes,web-based parallel coordinate visualization,interactive visual support | Front and back ends,Data mining,Computer science,Visualization,Metagenomics,Contig,Cluster analysis,Multiple time dimensions | Conference |
ISSN | Citations | PageRank |
2325-9442 | 0 | 0.34 |
References | Authors | |
0 | 4 | |
Name | Order | Citations | PageRank |
|---|---|---|---|
| Bertjan Broeksema | 1 | 49 | 4.79 |
| Fintan McGee | 2 | 0 | 0.68 |
| Magdalena Calusinska | 3 | 0 | 0.34 |
| Mohammad Ghoniem | 4 | 394 | 30.77 |