Paper Info
Title
Cloud processing of 1000 genomes sequencing data using Amazon Web Service.
Abstract
We deployed the genetic variant pipeline SNPTools in the cloud utilizing the Amazon Web Service (AWS). With the cloud SNPTools pipeline, we performed the SNP calling and genotype imputation on the 1000 Genomes Project Phase 3 data and assessed the quality of SNPs. We also explored different strategies of exploiting Amazon Elastic Cloud Compute instances and the Amazon Simple Storage Service in order to optimize the performance and cost of cloud computing. Our analysis shows that cloud computing will be indispensable to the Next Generation Sequencing data processing.
Year
DOI
Venue
2013
10.1109/GlobalSIP.2013.6736809
IEEE Global Conference on Signal and Information Processing
Keywords
DocType
ISSN
AWS cloud computing,1000 Genomes project,SNP calling,genotype imputation
Conference
2376-4066
Citations 
PageRank 
References 
1
0.37
2
Authors
3
Name
Order
Citations
PageRank
Zhuoyi Huang110.37
Jin Yu2211.54
Fuli Yu320.74