Name
Title | ||
|---|---|---|
A Combining Technique of Rate Law Functions for a Cost-Effective Reconfigurable Biological Simulator |
Abstract | ||
|---|---|---|
In order to simulate large scale biological models with a reconfigurable FPGA-based biochemical simulator system, reduction of required resources are essential. This paper proposes a method which combines common terms in rate law functions appeared in biochemical models and generates a shared hardware module used for numerical integration. In this approach, two functions are combined in a tree structure level, followed by pipeline scheduling and arithmetic module binding. The evaluation result reveals that this approach reduces hardware resources by 31.4 % on average at the cost of 14.4 % throughput degradation. |
Year | DOI | Venue |
|---|---|---|
2007 | 10.1109/FPL.2007.4380774 | FPL |
Keywords | DocType | ISSN |
numerical integration,cost effectiveness,arithmetic,biochemistry,field programmable gate arrays | Conference | 1946-1488 |
ISBN | Citations | PageRank |
978-1-4244-1060-6 | 1 | 0.37 |
References | Authors | |
9 | 13 | |
Name | Order | Citations | PageRank |
|---|---|---|---|
| Hideki Yamada | 1 | 20 | 3.81 |
| Naoki Iwanaga | 2 | 15 | 2.31 |
| Yuichiro Shibata | 3 | 157 | 37.99 |
| Yasunori Osana | 4 | 92 | 18.24 |
| Masato Yoshimi | 5 | 106 | 22.49 |
| Yow Iwaoka | 6 | 20 | 2.94 |
| Yuri Nishikawa | 7 | 20 | 5.16 |
| Toshinori Kojima | 8 | 20 | 3.83 |
| Hideharu Amano | 9 | 1375 | 210.21 |
| Akira Funahashi | 10 | 264 | 20.32 |
| Noriko Hiroi1 | 11 | 42 | 7.11 |
| Hiroaki Kitano | 12 | 3515 | 539.37 |
| Kiyoshi Oguri | 13 | 146 | 33.63 |