Name
Title | ||
|---|---|---|
A framework for the extraction of quantitative traits from 2D images of mature Arabidopsis thaliana |
Abstract | ||
|---|---|---|
In this work, we propose an image-based phenotyping framework for the determination of quantitative traits from mature Arabidopsis thaliana plants. Two-dimensional (2D) images taken from the dried and flattened plants are analyzed regarding their geometry as well as their branching topology. The realistic branching architecture is hereby reconstructed from a single 2D image using a tracing approach with a semi-circular search window. The centerline segments of the tracing procedure are subsequently merged and labeled based on a hierarchical approach combining continuity properties with geometrical and topological information determined during tracing. This paper covers a detailed description of the proposed plant phenotyping pipeline from the image acquisition process until the extraction of the quantitative traits. The framework is evaluated using a set of 106 images and compared to a manual phenotyping approach as well as a semi-automatic image-based approach. The most relevant results of this evaluation are presented. |
Year | DOI | Venue |
|---|---|---|
2016 | 10.1007/s00138-015-0720-z | Mach. Vis. Appl. |
Keywords | Field | DocType |
Image-based phenotyping,Geometrical traits,Topological traits,Tracing,Hierarchical reconstruction,Network of curvilinear structures | Plant phenotyping,Computer vision,Quantitative trait locus,Pattern recognition,Topological information,Computer science,Arabidopsis thaliana,Artificial intelligence,Tracing,Branching (version control) | Journal |
Volume | Issue | ISSN |
27 | 5 | 0932-8092 |
Citations | PageRank | References |
2 | 0.37 | 21 |
Authors | ||
4 | ||
Name | Order | Citations | PageRank |
|---|---|---|---|
| Marco Augustin | 1 | 6 | 0.79 |
| Yll Haxhimusa | 2 | 233 | 20.26 |
| Wolfgang Busch | 3 | 15 | 3.07 |
| Walter G. Kropatsch | 4 | 896 | 152.91 |