Name
Abstract | ||
|---|---|---|
Although the R platform and the add-on packages of the Bioconductor project are widely used in bioinformatics, the standard task of multiple sequence alignment has been neglected so far. The msa package, for the first time, provides a unified R interface to the popular multiple sequence alignment algorithms ClustalW, ClustalOmega and MUSCLE. The package requires no additional software and runs on all major platforms. Moreover, the msa package provides an R interface to the powerful (LTEX)-T-A package T(E)Xshade which allows for flexible and customizable plotting of multiple sequence alignments. |
Year | DOI | Venue |
|---|---|---|
2015 | 10.1093/bioinformatics/btv494 | BIOINFORMATICS |
Field | DocType | Volume |
Sequence alignment,Data mining,Programming language,R interface,Computer science,Bioconductor,Software,Multiple sequence alignment,R package | Journal | 31 |
Issue | ISSN | Citations |
24 | 1367-4803 | 1 |
PageRank | References | Authors |
0.63 | 12 | 4 |
Name | Order | Citations | PageRank |
|---|---|---|---|
| Ulrich Bodenhofer | 1 | 705 | 68.02 |
| Enrico Bonatesta | 2 | 1 | 0.63 |
| Christoph Horejs-Kainrath | 3 | 1 | 0.63 |
| S Hochreiter | 4 | 9471 | 440.12 |