Paper Info
Title
RSIADB, a collective resource for genome and transcriptome analyses in Rhizoctonia solani AG1 IA.
Abstract
Rice [Oryza sativa (L.)] feeds more than half of the world's population. Rhizoctonia solani is a major fungal pathogen of rice causing extreme crop losses in all rice-growing regions of the world. R. solani AG1 IA is a major cause of sheath blight in rice. In this study, we constructed a comprehensive and user-friendly web-based database, RSIADB, to analyse its draft genome and transcriptome. The database was built using the genome sequence (10 489 genes) and annotation information for R. solani AG1 IA. A total of six RNAseq samples of R. solani AG1 IA were also analysed, corresponding to 10, 18, 24, 32, 48 and 72 h after infection of rice leaves. The RSIADB database enables users to search, browse, and download gene sequences for R. solani AG1 IA, and mine the data using BLAST, Sequence Extractor, Browse and Construction Diagram tools that were integrated into the database. RSIADB is an important genomic resource for scientists working with R. solani AG1 IA and will assist researchers in analysing the annotated genome and transcriptome of this pathogen. This resource will facilitate studies on gene function, pathogenesis factors and secreted proteins, as well as provide an avenue for comparative analyses of genes expressed during different stages of infection.
Year
DOI
Venue
2016
10.1093/database/baw031
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION
Field
DocType
Volume
Genome,Population,Gene,Biology,Oryza sativa,Transcriptome,Whole genome sequencing,Bioinformatics,Rhizoctonia solani,Gene expression profiling
Journal
2016
ISSN
Citations 
PageRank 
1758-0463
0
0.34
References 
Authors
2
9
Name
Order
Citations
PageRank
Lei Chen113732.32
Peng Ai200.68
Jinfeng Zhang3122.99
Qiming Deng400.68
Shiquan Wang501.01
Shuangcheng Li6214.56
Jun Zhu705.41
Ping Li800.34
Ai-ping Zheng900.34