Name
Abstract | ||
|---|---|---|
We describe an R package designed for processing aligned reads from chromatin-oriented high-throughput sequencing experiments. Pasha (preprocessing of aligned sequences from HTS analyses) allows easy manipulation of aligned reads from short-read sequencing technologies (ChIP-seq, FAIRE-seq, MNase-Seq, ...) and offers innovative approaches such as ChIP-seq reads elongation, nucleosome midpoint piling strategy for positioning analyses, or the ability to subset paired-end reads by groups of insert size that can contain biologically relevant information. |
Year | DOI | Venue |
|---|---|---|
2016 | 10.1093/bioinformatics/btw206 | BIOINFORMATICS |
Field | DocType | Volume |
Pasha,Computer science,Preprocessor,Software,Bioinformatics,R package | Journal | 32 |
Issue | ISSN | Citations |
16 | 1367-4803 | 0 |
PageRank | References | Authors |
0.34 | 1 | 10 |
Name | Order | Citations | PageRank |
|---|---|---|---|
| Romain Fenouil | 1 | 1 | 0.71 |
| Nicolas Descostes | 2 | 0 | 0.34 |
| Lionel Spinelli | 3 | 0 | 0.68 |
| Frederic Koch | 4 | 1 | 0.71 |
| Muhammad Ahmad Maqbool | 5 | 0 | 0.34 |
| Touati Benoukraf | 6 | 1 | 0.71 |
| Pierre Cauchy | 7 | 1 | 0.71 |
| Charlène Innocenti | 8 | 0 | 0.34 |
| Pierre Ferrier | 9 | 1 | 0.71 |
| Jean-Christophe Andrau | 10 | 1 | 0.71 |