Name
Abstract | ||
|---|---|---|
Currently, the Gene Expression Omnibus (GEO) contains public data of over 1 million samples from more than 40 000 microarray-based functional genomics experiments. This provides a rich source of information for novel biological discoveries. However, unlocking this potential often requires retrieving and storing a large number of expression profiles from a wide range of different studies and platforms. The compendiumdb R package provides an environment for downloading functional genomics data from GEO, parsing the information into a local or remote database and interacting with the database using dedicated R functions, thus enabling seamless integration with other tools available in R/Bioconductor. |
Year | DOI | Venue |
|---|---|---|
2016 | 10.1093/bioinformatics/btw335 | BIOINFORMATICS |
Field | DocType | Volume |
Microsoft Windows,Computer science,Source code,Upload,Functional genomics,Bioconductor,Software,OS X,Bioinformatics,Perl | Journal | 32 |
Issue | ISSN | Citations |
18 | 1367-4803 | 0 |
PageRank | References | Authors |
0.34 | 8 | 3 |
Name | Order | Citations | PageRank |
|---|---|---|---|
| Umesh K. Nandal | 1 | 0 | 0.34 |
| Antoine H. C. van Kampen | 2 | 62 | 8.90 |
| Perry D. Moerland | 3 | 31 | 3.30 |