Name
Title | ||
|---|---|---|
PARRoT- a homology-based strategy to quantify and compare RNA-sequencing from non-model organisms. |
Abstract | ||
|---|---|---|
In this study, we proposed and implemented a strategy to analyze transcriptomes from non-reference organisms which offers the opportunity to quantify and compare transcriptome profiles through a homolog based virtual transcriptome reference. By using the homolog based reference, our strategy effectively avoids the problems that may cause from inconsistencies among transcriptomes. This strategy will shed lights on the field of comparative genomics for non-model organism. We have implemented PARRoT as a web service which is freely available at http://parrot.cgu.edu.tw . |
Year | DOI | Venue |
|---|---|---|
2016 | 10.1186/s12859-016-1366-1 | BMC Bioinformatics |
Keywords | Field | DocType |
Comparative transcriptome,De novo transcriptome assembly,Non-model transcriptome,Transcriptome quantification,Web service | Genome,De novo transcriptome assembly,Annotation,Biology,Transcriptome,Homology (biology),Bioinformatics,Computational biology,Model organism,Sequence assembly,DNA microarray | Journal |
Volume | Issue | ISSN |
17 | S-19 | 1471-2105 |
Citations | PageRank | References |
1 | 0.35 | 11 |
Authors | ||
9 | ||
Name | Order | Citations | PageRank |
|---|---|---|---|
| Richie Ruei-Chi Gan | 1 | 22 | 1.82 |
| Ting-wen Chen | 2 | 21 | 1.27 |
| Timothy H. Wu | 3 | 34 | 1.36 |
| Po-Jung Huang | 4 | 5 | 2.00 |
| Chi-Ching Lee | 5 | 56 | 5.82 |
| Yuan-Ming Yeh | 6 | 6 | 2.34 |
| C.C Chiu | 7 | 23 | 3.81 |
| Hsien-Da Huang | 8 | 835 | 63.83 |
| Petrus Tang | 9 | 26 | 3.80 |