Paper Info
Title
Genome Variation Map: a data repository of genome variations in BIG Data Center.
Abstract
The Genome Variation Map (GVM; http://bigd.big.ac.cn/gvm/) is a public data repository of genome variations. As a core resource in the BIG Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences, GVM dedicates to collect, integrate and visualize genome variations for a wide range of species, accepts submissions of different types of genome variations from all over the world and provides free open access to all publicly available data in support of worldwide research activities. Unlike existing related databases, GVM features integration of a large number of genome variations for a broad diversity of species including human, cultivated plants and domesticated animals. Specifically, the current implementation of GVM not only houses a total of similar to 4.9 billion variants for 19 species including chicken, dog, goat, human, poplar, rice and tomato, but also incorporates 8669 individual genotypes and 13 262 manually curated high-quality genotype-to-phenotype associations for non-human species. In addition, GVM provides friendly intuitive web interfaces for data submission, browse, search and visualization. Collectively, GVM serves as an important resource for archiving genomic variation data, helpful for better understanding population genetic diversity and deciphering complex mechanisms associated with different phenotypes.
Year
DOI
Venue
2018
10.1093/nar/gkx986
NUCLEIC ACIDS RESEARCH
Field
DocType
Volume
Genome,Genotype,Biology,Phenotype,Galveston Orientation and Amnesia Test,Genomics,Information repository,Genetics,Big data
Journal
46
Issue
ISSN
Citations 
D1
0305-1048
3
PageRank 
References 
Authors
0.43
10
10
Name
Order
Citations
PageRank
Shuhui Song1326.86
Dongmei Tian230.43
Cuiping Li349243.56
Bixia Tang44410.31
Lili Dong5296.23
Jing-Fa Xiao67520.44
Yiming Bao7759.92
Wenming Zhao86916.60
Hang He930.43
Zhang Zhang1017228.00