Name
Abstract | ||
|---|---|---|
The presented succinct index is the first feasible implementation of the q-gram index functionality that occupies around 3.5 GB of memory for a whole human reference genome. FEM is freely available at https://github.com/haowenz/FEM . |
Year | DOI | Venue |
|---|---|---|
2018 | 10.1186/s12859-018-2094-5 | BMC Bioinformatics |
Keywords | Field | DocType |
Hash index,Next-generation sequencing,Read mapping,Seed selection | Edit distance,Data structure,Biology,Parallel computing,Search engine indexing,Thread (computing),Hash function,Genetics,Memory footprint,Speedup,Scalability | Journal |
Volume | Issue | ISSN |
19 | 1 | 1471-2105 |
Citations | PageRank | References |
0 | 0.34 | 11 |
Authors | ||
5 | ||
Name | Order | Citations | PageRank |
|---|---|---|---|
| Haowen Zhang | 1 | 2 | 2.04 |
| Yuandong Chan | 2 | 23 | 3.90 |
| Kaichao Fan | 3 | 0 | 0.34 |
| Bertil Schmidt | 4 | 19 | 12.95 |
| Weiguo Liu | 5 | 13 | 3.33 |