Name
Title | ||
|---|---|---|
Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualization. |
Abstract | ||
|---|---|---|
Galaxy HiCExplorer is a web server that facilitates the study of the 3D conformation of chromatin by allowing Hi-C data processing, analysis and visualization. With the Galaxy HiCExplorer web server, users with little bioinformatic background can perform every step of the analysis in one workflow: mapping of the raw sequence data, creation of Hi-C contact matrices, quality assessment, correction of contact matrices and identification of topological associated domains (TADs) and A/B compartments. Users can create publication ready plots of the contact matrix, A/B compartments, and TADs on a selected genomic locus, along with additional information like gene tracks or ChIP-seq signals. Galaxy HiCExplorer is freely usable at: https://hicexplorer. usegalaxy. eu and is available as a Docker container: https://github.com/deeptools/docker-galaxy-hicexplorer. |
Year | DOI | Venue |
|---|---|---|
2018 | 10.1093/nar/gky504 | NUCLEIC ACIDS RESEARCH |
Field | DocType | Volume |
Molecular conformation,Computer graphics (images),Biology,Visualization,Software,Galaxy,Genetics,Web server,The Internet | Journal | 46 |
Issue | ISSN | Citations |
W1 | 0305-1048 | 0 |
PageRank | References | Authors |
0.34 | 5 | 10 |
Name | Order | Citations | PageRank |
|---|---|---|---|
| Joachim Wolff | 1 | 3 | 1.09 |
| Vivek Bhardwaj | 2 | 1 | 1.03 |
| Stephan Nothjunge | 3 | 0 | 0.34 |
| Gautier Richard | 4 | 0 | 0.34 |
| Gina Renschler | 5 | 0 | 0.34 |
| Ralf Gilsbach | 6 | 0 | 0.68 |
| Thomas Manke | 7 | 91 | 7.53 |
| Rolf Backofen | 8 | 1213 | 104.30 |
| Fidel Ramírez | 9 | 139 | 9.50 |
| Björn A. Grüning | 10 | 28 | 8.46 |