Title
Interactive knowledge discovery and data mining on genomic expression data with numeric formal concept analysis.
Abstract
The GED analysis problem gets transformed into the exploration of a sequence of lattices enabling the visualization of the hierarchical structure of the biclusters with a certain degree of granularity. The ability of FCA-based bi-clustering methods to index external databases such as GO allows us to obtain a quality measure of the biclusters, to observe the evolution of a gene throughout the different biclusters it appears in, to look for relevant biclusters-by observing their genes and what their persistence is-to infer, for instance, hypotheses on their function.
Year
DOI
Venue
2016
10.1186/s12859-016-1234-z
BMC bioinformatics
Keywords
Field
DocType
Biclustering,Data mining,Exploratory data analysis,Formal concept analysis,Gene expression data,Gene set enrichment,Knowledged discovery
Data science,Data mining,Gene ontology,Computer science,Genomics,Knowledge extraction,Biclustering,Bioinformatics,Exploratory data analysis,Formal concept analysis
Journal
Volume
Issue
ISSN
17
1
1471-2105
Citations 
PageRank 
References 
1
0.36
21
Authors
3