Title
Towards Integrating ImageJ with Deep Biomedical Models.
Abstract
Nowadays, deep learning techniques are playing an important role in different areas due to the fast increase in both computer processing capacity and availability of large amount of data. Their applications are diverse in the field of bioimage analysis, e.g. for classifying and segmenting microscopy images, for automating the localization of proteins or for automating brain MRI segmentation. Our goal in this project consists in including these deep learning techniques in ImageJ - one of the most used image processing programs in this research community. To do this, we want to develop an ImageJ plugin from which to use the models and functionalities of the main deep learning frameworks (such as Caffe, Keras or Tensorflow). It would be feasible to test the suitability of different models to the problem that is being studied at each moment, avoiding the problems of interoperability among different frameworks. As a first step, we will define an API that allows the invocation of deep models for object classification from several frameworks; and, subsequently, we will develop an ImageJ plugin to make the use of such an API easier.
Year
DOI
Venue
2018
10.1007/978-3-319-99608-0_40
DISTRIBUTED COMPUTING AND ARTIFICIAL INTELLIGENCE
Keywords
Field
DocType
Bioimage,Deep learning,Image processing,ImageJ,Interoperability,Object classification
Market segmentation,Software engineering,Computer science,Interoperability,Segmentation,Caffè,Image processing,Artificial intelligence,Deep learning,Plug-in,Computer processing,Distributed computing
Conference
Volume
ISSN
Citations 
801
2194-5357
0
PageRank 
References 
Authors
0.34
3
5
Name
Order
Citations
PageRank
Adrián Inés111.37
César Domínguez29518.93
Jónathan Heras39423.31
Eloy J. Mata4116.38
Vico Pascual55813.19