Name
Title | ||
|---|---|---|
SaGePhy: An improved phylogenetic simulation framework for gene and subgene evolution. |
Abstract | ||
|---|---|---|
A Summary: SaGePhy is a software package for improved phylogenetic simulation of gene and subgene evolution. SaGePhy can be used to generate species trees, gene trees and subgene or (protein) domain trees using a probabilistic birth-death process that allows for gene and subgene duplication, horizontal gene and subgene transfer and gene and subgene loss. SaGePhy implements a range of important features not found in other phylogenetic simulation frameworks/software. These include (i) simulation of subgene or domain level evolution inside one or more gene trees, (ii) simultaneous simulation of both additive and replacing horizontal gene/subgene transfers and (iii) probabilistic sampling of species tree and gene tree nodes, respectively, for gene-and domain-family birth. SaGePhy is open-source, platform independent and written in Java and Python. |
Year | DOI | Venue |
|---|---|---|
2019 | 10.1093/bioinformatics/btz081 | BIOINFORMATICS |
Field | DocType | Volume |
Data mining,Phylogenetic tree,Gene,Computer science,Computational biology | Journal | 35 |
Issue | ISSN | Citations |
18 | 1367-4803 | 0 |
PageRank | References | Authors |
0.34 | 6 | 2 |
Name | Order | Citations | PageRank |
|---|---|---|---|
| Soumya Kundu | 1 | 8 | 5.87 |
| Mukul S. Bansal | 2 | 294 | 23.97 |