Name
Title | ||
|---|---|---|
Search for New Candidate Genes Involved in the Comorbidity of Asthma and Hypertension Based on Automatic Analysis of Scientific Literature. |
Abstract | ||
|---|---|---|
Comorbid states of diseases significantly complicate diagnosis and treatment. Molecular mechanisms of comorbid states of asthma and hypertension are still poorly understood. Prioritization is a way for identifying genes involved in complex phenotypic traits. Existing methods of prioritization consider genetic, expression and evolutionary data, molecular-genetic networks and other. In the case of molecular-genetic networks, as a rule, protein-protein interactions and KEGG networks are used. ANDSystem allows reconstructing associative gene networks, which include more than 20 types of interactions, including protein-protein interactions, expression regulation, transport, catalysis, etc. In this work, a set of genes has been prioritized to find genes potentially involved in asthma and hypertension comorbidity. The prioritization was carried out using well-known methods (ToppGene and Endeavor) and a cross-talk centrality criterion, calculated by analysis of associative gene networks from ANDSystem. The identified genes, including ILIA, CD40LG, STAT3, IL15, FAS, APP, TLR2, C3, IL13 and CXCL10, may be involved in the molecular mechanisms of comorbid asthma/hypertension. An analysis of the dynamics of the frequency of mentioning the most priority genes in scientific publications revealed that the top 100 priority genes are significantly enriched with genes with increased positive dynamics, which may be a positive sign for further studies of these genes. |
Year | DOI | Venue |
|---|---|---|
2018 | 10.1515/jib-2018-0054 | JOURNAL OF INTEGRATIVE BIOINFORMATICS |
Keywords | Field | DocType |
ANDSystem,associative gene network,asthma,comorbid disease,dynamics of interest of genes in publications,gene prioritization,hypertension | Scientific literature,Asthma,Candidate gene,Computer science,Comorbidity,Bioinformatics | Journal |
Volume | Issue | ISSN |
15 | SP4 | 1613-4516 |
Citations | PageRank | References |
0 | 0.34 | 5 |
Authors | ||
10 | ||
Name | Order | Citations | PageRank |
|---|---|---|---|
| Olga V. Saik | 1 | 8 | 2.27 |
| Pavel S. Demenkov | 2 | 9 | 2.31 |
| Timofey V. Ivanisenko | 3 | 23 | 3.15 |
| Elena Yu Bragina | 4 | 0 | 1.35 |
| Maxim Freidin | 5 | 0 | 1.01 |
| Victor E. Dosenko | 6 | 0 | 0.68 |
| Olga I. Zolotareva | 7 | 0 | 0.34 |
| Evgeniy L. Choynzonov | 8 | 0 | 0.34 |
| Ralf Hofestädt | 9 | 229 | 67.96 |
| Vladimir A. Ivanisenko | 10 | 10 | 4.03 |