Title
Application-Level Differential Checkpointing for HPC Applications with Dynamic Datasets
Abstract
High-performance computing (HPC) requires resilience techniques such as checkpointing in order to tolerate failures in supercomputers. As the number of nodes and memory in supercomputers keeps on increasing, the size of checkpoint data also increases dramatically, sometimes causing an I/O bottleneck. Differential checkpointing (dCP) aims to minimize the checkpointing overhead by only writing data differences. This is typically implemented at the memory page level, sometimes complemented with hashing algorithms. However, such a technique is unable to cope with dynamic-size datasets. In this work, we present a novel dCP implementation with a new file format that allows fragmentation of protected datasets in order to support dynamic sizes. We identify dirty data blocks using hash algorithms. In order to evaluate the dCP performance, we ported the HPC applications xPic, LULESH 2.0 and Heat2D and analyze them regarding their potential of reducing I/O with dCP and how this data reduction influences the checkpoint performance. In our experiments, we achieve reductions of up to 62% of the checkpoint time.
Year
DOI
Venue
2019
10.1109/CCGRID.2019.00015
2019 19th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID)
Keywords
DocType
Volume
Fault Tolerance,Multilevel Checkpointing,Differential Checkpointing,Incremental Checkpointing
Conference
abs/1906.05038
ISSN
ISBN
Citations 
2376-4414
978-1-7281-0913-8
2
PageRank 
References 
Authors
0.38
5
2
Name
Order
Citations
PageRank
Kai Keller132.09
Leonardo Bautista-Gomez214811.33