Name
Abstract | ||
|---|---|---|
A Summary: Statistical dependencies are present in a variety of sequence data, but are not discernible from traditional sequence logos. Here, we present the R package DepLogo for visualizing inter-position dependencies in aligned sequence data as dependency logos. Dependency logos make dependency structures, which correspond to regular co-occurrences of symbols at dependent positions, visually perceptible. To this end, sequences are partitioned based on their symbols at highly dependent positions as measured by mutual information, and each partition obtains its own visual representation. We illustrate the utility of the DepLogo package in several use cases generating dependency logos from DNA, RNA and protein sequences. |
Year | DOI | Venue |
|---|---|---|
2019 | 10.1093/bioinformatics/btz507 | BIOINFORMATICS |
Field | DocType | Volume |
Data mining,Computer science | Journal | 35 |
Issue | ISSN | Citations |
22 | 1367-4803 | 0 |
PageRank | References | Authors |
0.34 | 0 | 3 |
Name | Order | Citations | PageRank |
|---|---|---|---|
| Jan Grau | 1 | 132 | 10.64 |
| Martin Nettling | 2 | 10 | 3.02 |
| J. Keilwagen | 3 | 110 | 10.26 |