PDBe: improved findability of macromolecular structure data in the PDB.

Paper Info

Title
PDBe: improved findability of macromolecular structure data in the PDB.

Abstract
The Protein Data Bank in Europe (PDBe), a founding member of the Worldwide Protein Data Bank (wwPDB), actively participates in the deposition, curation, validation, archiving and dissemination of macromolecular structure data. PDBe supports diverse research communities in their use of macromolecular structures by enriching the PDB data and by providing advanced tools and services for effective data access, visualization and analysis. This paper details the enrichment of data at PDBe, including mapping of RNA structures to Rfam, and identification of molecules that act as cofactors. PDBe has developed an advanced search facility with similar to 100 data categories and sequence searches. New features have been included in the LiteMol viewer at PDBe, with updated visualization of carbohydrates and nucleic acids. Small molecules are now mapped more extensively to external databases and their visual representation has been enhanced. These advances help users to more easily find and interpret macromolecular structure data in order to solve scientific problems.

Authors (31 rows)

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Name	Order	Citations	PageRank
David R. Armstrong	1	29	2.44
John M Berrisford	2	61	4.42
Matthew J. Conroy	3	131	11.38
Aleksandras Gutmanas	4	110	11.20
Stephen Anyango	5	9	1.93
Preeti Choudhary	6	0	0.34
Alice R Clark	7	0	0.34
Jose M. Dana	8	206	16.67
Mandar Deshpande	9	0	0.34
Roisin Dunlop	10	0	0.34
Paul Gane	11	0	0.34
Romana Gáborová	12	0	0.34
Deepti Gupta	13	9	0.92
Pauline Haslam	14	9	0.92
Jaroslav Koča	15	0	0.34
Lora Mak	16	9	0.92
Saqib Mir	17	225	19.96
Abhik Mukhopadhyay	18	59	4.03
Nurul Nadzirin	19	0	0.68
Sreenath Nair	20	0	0.34
Typhaine Paysan-Lafosse	21	3	0.70
Lukas Pravda	22	0	0.34
David Sehnal	23	0	0.34
Osman Salih	24	0	0.34
Oliver Smart	25	0	0.34
James Tolchard	26	0	0.34
Mihaly Varadi	27	9	1.25
Radka Svobodova-Vařeková	28	0	0.34
Hossam Zaki	29	0	0.34
Gerard J Kleywegt	30	0	0.34
Sameer Velankar	31	18	1.13