Title
Clinical trial search: Using biomedical language understanding models for re-ranking
Abstract
•We quantify the effectiveness of transformer-based models for clinical trial search. This is the first to have compared these methods under the same retrieval framework for a fair comparison.•We evaluate a broad selection of re-ranking models to uncover the role of pre-training corpus in evidence search for precision medicine.•Our evaluation points to a neural re-ranking system which achieves state-of-the-art results.•Our search system is fully automatic; its effectiveness does not rely on manual query reformulation strategies, nor problem-specific heuristic approaches.•With limited training data, leveraging the transfer learning inherent to transformer-based models makes the proposed model competitive to heuristic, manually optimised systems.
Year
DOI
Venue
2020
10.1016/j.jbi.2020.103530
Journal of Biomedical Informatics
Keywords
DocType
Volume
Clinical decision making,Document search,Information retrieval,Ranking functions,Learning-to-rank,Bidirectional transformer encoder,Natural language processing,Complex search,Precision medicine
Journal
109
ISSN
Citations 
PageRank 
1532-0464
0
0.34
References 
Authors
0
3
Name
Order
Citations
PageRank
Maciej Rybinski101.01
Jerry Xu200.34
Sarvnaz Karimi338033.01