Title
Cancer Registry Information Extraction via Transfer Learning.
Abstract
A cancer registry is a critical and massive database for which various types of domain knowledge are needed and whose maintenance requires labor-intensive data curation. In order to facilitate the curation process for building a high-quality and integrated cancer registry database, we compiled a cross-hospital corpus and applied neural network methods to develop a natural language processing system for extracting cancer registry variables buried in unstructured pathology reports. The performance of the developed networks was compared with various baselines using standard micro-precision, recall and F-measure. Furthermore, we conducted experiments to study the feasibility of applying transfer learning to rapidly develop a well-performing system for processing reports from different sources that might be presented in different writing styles and formats. The results demonstrate that the transfer learning method enables us to develop a satisfactory system for a new hospital with only a few annotations and suggest more opportunities to reduce the burden of cancer registry curation.
Year
DOI
Venue
2020
10.18653/v1/2020.clinicalnlp-1.22
ClinicalNLP@EMNLP
DocType
Citations 
PageRank 
Conference
0
0.34
References 
Authors
6
17