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DANNY BARASH
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Name
Affiliation
Papers
DANNY BARASH
Department of Computer Science, Ben-Gurion University, 84105 Beer-Sheva, Israel
39
Collaborators
Citations
PageRank
49
265
24.21
Referers
Referees
References
669
368
313
Search Limit
100
669
Publications (39 rows)
Collaborators (49 rows)
Referers (100 rows)
Referees (100 rows)
Title
Citations
PageRank
Year
IndelsRNAmute: predicting deleterious multiple point substitutions and indels mutations.
0
0.34
2022
incaRNAfbinv 2.0 - A webserver and software with motif control for fragment-based design of RNAs.
0
0.34
2020
RiboD: A comprehensive database for prokaryotic riboswitches.
1
0.35
2019
A Biologically Meaningful Extension of the Efficient Method for Deleterious Mutations Prediction in RNAs: Insertions and Deletions in Addition to Substitution Mutations.
0
0.34
2018
Design of RNAs: comparing programs for inverse RNA folding.
3
0.39
2018
A Robust and Efficient Numerical Method for RNA-Mediated Viral Dynamics.
0
0.34
2017
Optimal Shrinkage of Singular Values Under Random Data Contamination
0
0.34
2017
incaRNAfbinv: a web server for the fragment-based design of RNA sequences.
1
0.35
2016
RNAfbinv: an interactive Java application for fragment-based design of RNA sequences.
4
0.42
2013
Efficient procedures for the numerical simulation of mid-size RNA kinetics.
2
0.39
2012
On topological indices for small RNA graphs.
0
0.34
2012
RNAexinv: An extended inverse RNA folding from shape and physical attributes to sequences.
18
0.65
2011
The RNAmute web server for the mutational analysis of RNA secondary structures.
4
0.49
2011
Mutational analysis in RNAs: comparing programs for RNA deleterious mutation prediction.
8
0.83
2011
Bioinformatic analysis of the neutrality of RNA secondary structure elements across genotypes reveals evidence for direct evolution of genetic robustness in HCV.
1
0.41
2010
FineStr: a web server for single-base-resolution nucleosome positioning.
7
0.78
2010
An image processing approach to computing distances between RNA secondary structures dot plots.
6
0.47
2009
Computational Identification of Three-Way Junctions in Folded RNAs: A Case Study in Arabidopsis.
1
0.35
2008
An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptimal folding solutions.
33
0.60
2008
FASH: A web application for nucleotides sequence search.
1
0.38
2008
Finding a common motif of RNA sequences using genetic programming: the GeRNAMo system.
7
0.54
2007
A structure-based flexible search method for motifs in RNA.
3
0.41
2007
Structural analysis of single-point mutations given an RNA sequence: a case study with RNAMute
3
0.49
2006
RNAmute: RNA secondary structure mutation analysis tool.
5
0.56
2006
Temperature and Mutation Switches in the Secondary Structure of Small RNAs
0
0.34
2005
Pattern Recognition Method to Detect Vulnerable Spots in an RNA Sequence for Bacterial Resistance to the Antibiotic Spectinomycin
0
0.34
2005
Integration of RNA Search methods for Identifying Novel Riboswitch Patterns in Eukaryotes
0
0.34
2005
STR2: A structure to string approach for locating G-box riboswitch shapes in pre-selected genes.
3
0.47
2004
Fine-Grain Matrix Graph Representation for Predicting Mutations Leading to Conformational Rearrangements in Small RNAs
0
0.34
2004
RNA Motif Search Using the Structure to String (STR2) Method
1
0.36
2004
Spectral decomposition for the search and analysis of RNA secondary structure.
4
0.49
2004
Meanshift Clustering for DNA Microarray Analysis
4
0.45
2004
Second eigenvalue of the Laplacian matrix for predicting RNA conformational switch by mutation.
11
0.81
2004
A common framework for nonlinear diffusion, adaptive smoothing, bilateral filtering and mean shift
92
4.87
2004
Multiplicative Operator Splittings in Nonlinear Diffusion: From Spatial Splitting to Multiple Timesteps
11
1.28
2003
A common viewpoint on broad kernel filtering and nonlinear diffusion
5
0.69
2003
Inherent speedup limitations in multiple time step/particle mesh Ewald algorithms.
5
0.94
2003
An Accurate Operator Splitting Scheme for Nonlinear Diffusion Filtering
8
0.82
2001
Bilateral Filtering and Anisotropic Diffusion: Towards a Unified Viewpoint
13
0.80
2001
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