| QuanTest2: Benchmarking Multiple Sequence Alignments using Secondary Structure Prediction. | 0 | 0.34 | 2020 |
| Protein multiple sequence alignment benchmarking through secondary structure prediction. | 4 | 0.45 | 2017 |
| Using de novo protein structure predictions to measure the quality of very large multiple sequence alignments. | 5 | 0.48 | 2016 |
| OD-seq: outlier detection in multiple sequence alignments | 3 | 0.42 | 2015 |
| Instability in progressive multiple sequence alignment algorithms. | 4 | 0.46 | 2015 |
| Systematic exploration of guide-tree topology effects for small protein alignments. | 7 | 0.43 | 2014 |
| Making automated multiple alignments of very large numbers of protein sequences. | 19 | 1.05 | 2013 |
| Sequence embedding for fast construction of guide trees for multiple sequence alignment. | 27 | 1.14 | 2010 |
| Detecting microRNA activity from gene expression data. | 15 | 0.90 | 2010 |
| Fast embedding methods for clustering tens of thousands of sequences. | 3 | 0.49 | 2008 |
| Distinct Patterns in the Regulation and Evolution of Human Cancer Genes. | 1 | 0.36 | 2008 |
| R-Coffee: a web server for accurately aligning noncoding RNA sequences. | 6 | 0.56 | 2008 |
| Supervised multivariate analysis of sequence groups to identify specificity determining residues. | 26 | 0.74 | 2007 |
| The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods. | 8 | 0.55 | 2007 |
| Clustal W and Clustal X version 2.0 | 407 | 30.14 | 2007 |
| Integrating transcription factor binding site information with gene expression datasets | 7 | 0.61 | 2007 |
| Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data. | 109 | 4.66 | 2006 |
| Analysis and Comparison of Benchmarks for Multiple Sequence Alignment. | 23 | 1.70 | 2006 |
| APDB: a web server to evaluate the accuracy of sequence alignments using structural information. | 0 | 0.34 | 2006 |
| MADE4: an R package for multivariate analysis of gene expression data | 16 | 1.38 | 2005 |
| Evaluation of iterative alignment algorithms for multiple alignment | 17 | 0.99 | 2005 |
| Cross-platform comparison and visualisation of gene expression data using co-inertia analysis. | 32 | 3.23 | 2003 |
| APDB: a novel measure for benchmarking sequence alignment methods without reference alignments. | 12 | 1.93 | 2003 |
| A SAT-Based Approach to Multiple Sequence Alignment | 4 | 0.45 | 2003 |
| Multiple Sequence Alignment With The Clustal Series Of Programs | 183 | 22.66 | 2003 |
| Between-group analysis of microarray data. | 34 | 7.40 | 2002 |
| MIAH: automatic alignment of eukaryotic SSU rRNAs. | 0 | 0.34 | 1999 |
| Empirical estimation of the reliability of ribosomal RNA alignments | 2 | 0.37 | 1998 |
| COFFEE: an objective function for multiple sequence alignments. | 76 | 14.14 | 1998 |
| Optimization of ribosomal RNA profile alignments. | 3 | 1.74 | 1998 |
| Improved sensitivity of profile searches through the use of sequence weights and gap excision. | 45 | 114.45 | 1994 |
| The Embl Data Library | 19 | 3.54 | 1993 |
| OBSTRUCT: a program to obtain largest cliques from a protein sequence set according to structural resolution and sequence similarity. | 5 | 1.67 | 1992 |
| CLUSTAL V: improved software for multiple sequence alignment. | 46 | 56.52 | 1992 |
| EMBLSCAN: fast approximate DNA database searches on compact disc. | 2 | 0.61 | 1992 |
| Sequence ordinations: a multivariate analysis approach to analysing large sequence data sets | 12 | 4.38 | 1992 |
| GCWIND: a microcomputer program for identifying open reading frames according to codon positional G+C content. | 1 | 0.40 | 1992 |
| Fast and sensitive multiple sequence alignments on a microcomputer. | 46 | 86.11 | 1989 |
| Interfacing similarity search software with the sequence retrieval system ACNUC. | 0 | 0.34 | 1987 |
| The Embl Data Library | 34 | 15.43 | 1986 |
