Name
Title | ||
|---|---|---|
APDB: a web server to evaluate the accuracy of sequence alignments using structural information. |
Abstract | ||
|---|---|---|
The APDB webserver uses structural information to evaluate the alignment of sequences with known structures. It returns a score correlated to the overall alignment accuracy as well as a local evaluation. Any sequence alignment can be analyzed with APDB provided it includes at least two proteins with known structures. Sequences without a known structure are simply ignored and do not contribute to the scoring procedure.APDB is part of the T-Coffee suite of tools for alignment analysis, it is available on www.tcoffee.org. A stand-alone version of the package is also available as a freeware open source from the same address. |
Year | DOI | Venue |
|---|---|---|
2006 | 10.1093/bioinformatics/btl404 | Bioinformatics |
Keywords | Field | DocType |
local evaluation,web server,sequence alignment,known structure,structural information,overall alignment accuracy,apdb webserver,scoring procedure,standalone version,t-coffee suite,freeware open source,alignment analysis | Sequence alignment,Data mining,Suite,Computer science,Bioinformatics,Web server | Journal |
Volume | Issue | ISSN |
22 | 19 | 1367-4811 |
Citations | PageRank | References |
0 | 0.34 | 3 |
Authors | ||
7 | ||
Name | Order | Citations | PageRank |
|---|---|---|---|
| Fabrice Armougom | 1 | 49 | 4.11 |
| Olivier Poirot | 2 | 78 | 10.28 |
| Sébastien Moretti | 3 | 186 | 14.46 |
| Desmond G. Higgins | 4 | 1263 | 383.91 |
| Phillip Bucher | 5 | 133 | 22.21 |
| Vladimir Keduas | 6 | 41 | 3.56 |
| Cedric Notredame | 7 | 100 | 6.94 |