| Characterizing RNA Pseudouridylation by Convolutional Neural Networks. | 0 | 0.34 | 2021 |
| Iris: A Method For Predicting In Vivo Rna Secondary Structures Using Paris Data | 0 | 0.34 | 2020 |
| Reinforced Molecular Optimization with Neighborhood-Controlled Grammars | 0 | 0.34 | 2020 |
| DeepHINT: Understanding HIV-1 integration via deep learning with attention. | 2 | 0.38 | 2019 |
| OMGS - Optical Map-Based Genome Scaffolding. | 1 | 0.36 | 2019 |
| Rose: A Deep Learning Based Framework For Predicting Ribosome Stalling | 0 | 0.34 | 2017 |
| TITER: predicting translation initiation sites by deep learning. | 0 | 0.34 | 2017 |
| H-PoP and H-PoPG: heuristic partitioning algorithms for single individual haplotyping of polyploids. | 0 | 0.34 | 2016 |
| Accurate inference of isoforms from multiple sample RNA-Seq data. | 4 | 0.71 | 2015 |
| Improved Approximation Algorithms for the Maximum Happy Vertices and Edges Problems | 5 | 0.57 | 2015 |
| Differential regulation enrichment analysis via the integration of transcriptional regulatory network and gene expression data. | 2 | 0.38 | 2015 |
| AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references. | 2 | 0.37 | 2014 |
| Phylogeny-based classification of microbial communities. | 3 | 0.43 | 2014 |
| Differential gene expression analysis using coexpression and RNA-Seq data. | 6 | 0.45 | 2013 |
| BRANCH: boosting RNA-Seq assemblies with partial or related genomic sequences. | 7 | 0.62 | 2013 |
| A probabilistic approach to accurate abundance-based binning of metagenomic reads | 6 | 0.60 | 2012 |
| Transcriptome assembly and isoform expression level estimation from biased RNA-Seq reads. | 18 | 1.09 | 2012 |
| Detecting genome-wide epistases based on the clustering of relatively frequent items. | 16 | 0.77 | 2012 |
| A linear-time algorithm for reconstructing zero-recombinant haplotype configuration on a pedigree. | 5 | 0.35 | 2012 |
| Workshop: Transcriptome assembly and isoform expression level estimation from biased RNA-Seq reads | 2 | 0.38 | 2012 |
| Inference of isoforms from short sequence reads. | 18 | 2.72 | 2011 |
| IsoLasso: A LASSO Regression Approach to RNA-Seq Based Transcriptome Assembly - (Extended Abstract) | 5 | 0.63 | 2011 |
| Inferring haplotypes from genotypes on a pedigree with mutations, genotyping errors and missing alleles. | 5 | 0.58 | 2011 |
| IsoLasso: a LASSO regression approach to RNA-Seq based transcriptome assembly. | 23 | 1.27 | 2011 |
| Accurate HLA type inference using a weighted similarity graph. | 14 | 0.64 | 2010 |
| Computational prediction of type III secreted proteins from gram-negative bacteria. | 20 | 1.01 | 2010 |
| A linear-time algorithm for reconstructing zero-recombinant haplotype configuration on pedigrees without mating loops | 4 | 0.59 | 2010 |
| MSOAR 2.0: Incorporating tandem duplications into ortholog assignment based on genome rearrangement. | 27 | 0.90 | 2010 |
| Beyond evolutionary trees | 0 | 0.34 | 2010 |
| Polony Identification Using the EM Algorithm Based on a Gaussian Mixture Model | 0 | 0.34 | 2010 |
| Accelerated similarity searching and clustering of large compound sets by geometric embedding and locality sensitive hashing. | 11 | 0.58 | 2010 |
| An Efficient Algorithm for Haplotype Inference on Pedigrees with a Small Number of Recombinants (Extended Abstract) | 4 | 0.54 | 2009 |
| Efficient Inference of Haplotypes from Genotypes on a Pedigree with Mutations and Missing Alleles (Extented Abstract) | 2 | 0.41 | 2009 |
| Some Algorithmic Challenges in Genome-Wide Ortholog Assignment | 5 | 0.47 | 2009 |
| Efficient Algorithms for Reconstructing Zero-Recombinant Haplotypes on a Pedigree Based on Fast Elimination of Redundant Linear Equations | 7 | 0.62 | 2009 |
| Computational prediction of novel non-coding RNAs in Arabidopsis thaliana. | 19 | 0.43 | 2009 |
| On the minimum common integer partition problem | 11 | 0.77 | 2008 |
| A survey on haplotyping algorithms for tightly linked markers. | 10 | 1.09 | 2008 |
| W-AlignACE: an improved Gibbs sampling algorithm based on more accurate position weight matrices learned from sequence and gene expression/ChIP-chip data. | 4 | 0.43 | 2008 |
| On the Approximation of Correlation Clustering and Consensus Clustering | 16 | 0.71 | 2008 |
| Approximate clustering of incomplete fingerprints | 1 | 0.39 | 2008 |
| Finding Additive Biclusters with Random Background | 1 | 0.35 | 2008 |
| MSOAR: a high-throughput ortholog assignment system based on genome rearrangement. | 22 | 1.16 | 2007 |
| A Combinatorial Approach to Genome-Wide Ortholog Assignment: Beyond Sequence Similarity Search | 0 | 0.34 | 2007 |
| Average-case analysis of QuickSort and Binary Insertion Tree height using incompressibility | 0 | 0.34 | 2007 |
| Computing the breakpoint distance between partially ordered genomes. | 3 | 0.41 | 2007 |
| Study of gene function based on spatial co-expression in a high-resolution mouse brain atlas. | 12 | 0.51 | 2007 |
| A parsimony approach to genome-wide ortholog assignment | 11 | 0.76 | 2006 |
| A general framework for biclustering gene expression data. | 3 | 0.39 | 2006 |
| OligoSpawn: a software tool for the design of overgo probes from large unigene datasets. | 47 | 1.27 | 2006 |
