| The Unconstrained Diameters of the Duplication-Loss Cost and the Loss Cost | 0 | 0.34 | 2021 |
| Consensus of All Solutions for Intractable Phylogenetic Tree Inference | 0 | 0.34 | 2021 |
| The Cluster Affinity Distance for Phylogenies. | 0 | 0.34 | 2019 |
| Foreword: Special Issue for the 2019 International Conference on Bioinformatics and Computational Biology (BICOB-2019) | 0 | 0.34 | 2019 |
| Robinson-Foulds Reticulation Networks. | 0 | 0.34 | 2019 |
| Consensus Clusters in Robinson-Foulds Reticulation Networks. | 0 | 0.34 | 2019 |
| Mathematical properties of the gene duplication cost. | 0 | 0.34 | 2019 |
| Feasibility Algorithms for the Duplication-Loss Cost. | 0 | 0.34 | 2019 |
| Introduction to JBCB Special Issue on BICOB-2018. | 0 | 0.34 | 2018 |
| Cluster Matching Distance for Rooted Phylogenetic Trees. | 0 | 0.34 | 2018 |
| Bijective Diameters of Gene Tree Parsimony Costs. | 2 | 0.40 | 2018 |
| Phylogenetic Consensus for Exact Median Trees. | 0 | 0.34 | 2018 |
| Cophenetic Median Trees Under the Manhattan Distance | 0 | 0.34 | 2017 |
| Synthesizing large-scale species trees using the strict consensus approach. | 1 | 0.36 | 2017 |
| Unconstrained Diameters for Deep Coalescence. | 1 | 0.37 | 2017 |
| Synthesizing Species Trees from Unrooted Gene Trees: A Parameterized Approach | 1 | 0.37 | 2017 |
| Path-Difference Median Trees. | 0 | 0.34 | 2016 |
| Manhattan Path-Difference Median Trees. | 0 | 0.34 | 2016 |
| Robinson-Foulds Median Trees: A Clique-based Heuristic. | 0 | 0.34 | 2016 |
| Consensus properties and their large-scale applications for the gene duplication problem. | 3 | 0.45 | 2016 |
| DrML: probabilistic modeling of gene duplications. | 1 | 0.36 | 2014 |
| Unconstrained gene tree diameters for deep coalescence | 2 | 0.39 | 2014 |
| Duplication Cost Diameters. | 1 | 0.36 | 2014 |
| Maximizing Deep Coalescence Cost. | 4 | 0.42 | 2014 |
| Refining discordant gene trees. | 2 | 0.38 | 2014 |
| Guest Editors Introduction to the Special Section on Bioinformatics Research and Applications | 1 | 0.43 | 2014 |
| Unrooted Tree Reconciliation: A Unified Approach | 17 | 0.75 | 2013 |
| Algorithms for Genome-Scale Phylogenetics Using Gene Tree Parsimony. | 6 | 0.51 | 2013 |
| Exact solutions for species tree inference from discordant gene trees. | 12 | 0.66 | 2013 |
| Efficient algorithms for knowledge-enhanced supertree and supermatrix phylogenetic problems. | 6 | 0.51 | 2013 |
| GTP supertrees from unrooted gene trees: linear time algorithms for NNI based local searches | 8 | 0.53 | 2012 |
| Algorithms: simultaneous error-correction and rooting for gene tree reconciliation and the gene duplication problem. | 18 | 0.67 | 2012 |
| Exploring biological interaction networks with tailored weighted quasi-bicliques. | 13 | 0.52 | 2012 |
| Deep Coalescence Reconciliation with Unrooted Gene Trees: Linear Time Algorithms. | 9 | 0.62 | 2012 |
| Efficient error correction algorithms for gene tree reconciliation based on duplication, duplication and loss, and deep coalescence. | 13 | 0.59 | 2012 |
| A robinson-foulds measure to compare unrooted trees with rooted trees | 5 | 0.48 | 2012 |
| Algorithms for knowledge-enhanced supertrees | 1 | 0.35 | 2012 |
| Consensus properties for the deep coalescence problem and their application for scalable tree search. | 15 | 0.61 | 2012 |
| Mining biological interaction networks using weighted quasi-bicliques | 2 | 0.46 | 2011 |
| Maximum likelihood models and algorithms for gene tree evolution with duplications and losses. | 18 | 0.70 | 2011 |
| An ILP solution for the gene duplication problem. | 19 | 0.68 | 2011 |
| Algorithms for rapid error correction for the gene duplication problem | 3 | 0.40 | 2011 |
| A linear time algorithm for error-corrected reconciliation of unrooted gene trees | 15 | 0.70 | 2011 |
| The deep coalescence consensus tree problem is Pareto on clusters | 4 | 0.51 | 2011 |
| The plexus model for the inference of ancestral multidomain proteins. | 1 | 0.37 | 2011 |
| Invited: Reconciled gene trees and their applications | 0 | 0.34 | 2011 |
| Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models. | 28 | 1.20 | 2010 |
| Triplet-Supertrees constructed from Minimum Triplet Presentations | 0 | 0.34 | 2010 |
| iGTP: a software package for large-scale gene tree parsimony analysis. | 30 | 1.07 | 2010 |
| Inferring species trees from gene duplication episodes | 3 | 0.42 | 2010 |
