Ramanathan Sowdhamini

Author Info

Name	Affiliation	Papers
RAMANATHAN SOWDHAMINI	National Centre for Biological Sciences, Tata Institute of Fundamental Research, GKVK Campus, Bellary Road, Bangalore 560 065, India	44
Collaborators	Citations	PageRank
107	215	21.20
Referers	Referees	References
488	1145	441

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1001000

Publications (44 rows)

Collaborators (100 rows)

Referers (100 rows)

Referees (100 rows)

Title	Citations	PageRank	Year
PASS2 version 6: a database of structure-based sequence alignments of protein domain superfamilies in accordance with SCOPe.	0	0.34	2019
GenDiS database update with improved approach and features to recognize homologous sequences of protein domain superfamilies.	0	0.34	2019
RStrucFam: a web server to associate structure and cognate RNA for RNA-binding proteins from sequence information.	1	0.36	2016
Rapid and enhanced remote homology detection by cascading hidden Markov model searches in sequence space.	0	0.34	2016
Pass2 Database For The Structure-Based Sequence Alignment Of Distantly Related Scop Domain Superfamilies: Update To Version 5 And Added Features	2	0.38	2016
DOCKSCORE: a webserver for ranking protein-protein docked poses.	1	0.39	2015
NrichD database: sequence databases enriched with computationally designed protein-like sequences aid in remote homology detection.	0	0.34	2015
SInCRe—structural interactome computational resource for Mycobacterium tuberculosis	1	0.37	2015
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat	1	0.35	2015
LenVarDB: database of length-variant protein domains.	2	0.39	2014
ECMIS: computational approach for the identification of hotspots at protein-protein interfaces.	4	0.34	2014
3PFDB+: improved search protocol and update for the identification of representatives of protein sequence domain families.	0	0.34	2014
Structural updates of alignment of protein domains and consequences on evolutionary models of domain superfamilies.	0	0.34	2013
Re-visiting protein-centric two-tier classification of existing DNA-protein complexes.	2	0.40	2012
Functional repertoire, molecular pathways and diseases associated with 3D domain swapping in the human proteome.	2	0.36	2012
Poster: HORIBALFRE: Higher Order Residue Interactions Based ALgorithm for Fold REcognition	0	0.34	2011
Critical assessment of structure-based sequence alignment methods at distant relationships.	1	0.38	2011
3DSwap: curated knowledgebase of proteins involved in 3D domain swapping.	5	0.46	2011
PASS2: A Database of Structure-Based Sequence Alignments of Protein Structural Domain Superfamilies.	0	0.34	2011
Search for Protein Sequence Homologues that Display Considerable Domain Length Variations.	1	0.37	2011
HORI: a web server to compute Higher Order Residue Interactions in protein structures.	13	0.68	2010
A Sequence Data Mining Protocol to Identify Best Representative Sequence for Protein Domain Families	1	0.38	2010
PeptideMine--a webserver for the design of peptides for protein-peptide binding studies derived from protein-protein interactomes.	10	0.35	2010
3PFDB - A database of Best Representative PSSM Profiles (BRPs) of Protein Families generated using a novel data mining approach.	6	0.49	2009
Sequence and Structural Analyses of Interleukin-8-Like Chemokine Superfamily.	1	0.36	2008
MegaMotifBase: a database of structural motifs in protein families and superfamilies.	10	0.71	2008
PURE: A webserver for the prediction of domains in unassigned regions in proteins	31	0.42	2008
A machine learning approach for the identification of odorant binding proteins from sequence-derived properties.	17	0.42	2007
HARMONY: a server for the assessment of protein structures.	1	0.37	2006
Cascade PSI-BLAST web server: a remote homology search tool for relating protein domains.	4	0.45	2006
Enhanced Structure Prediction of Gene Products Containing Class III Adenylyl Cyclase Domains.	1	0.36	2006
SSToSS - Sequence-Structural Templates of Single-Member Superfamilies.	2	0.49	2006
iMOTdb--a comprehensive collection of spatially interacting motifs in proteins.	2	0.39	2006
DIAL: a web-based server for the automatic identification of structural domains in proteins.	4	0.50	2005
SCANMOT: searching for similar sequences using a simultaneous scan of multiple sequence motifs.	6	0.60	2005
GenDiS: Genomic Distribution of protein structural domain Superfamilies.	3	0.42	2005
FASSM: Enhanced Function Association in Whole Genome Analysis Using Sequence and Structural Motifs.	4	0.46	2005
SDBASE: a consortium of native and modelled disulphide bonds in proteins	1	0.41	2004
iMOT: an interactive package for the selection of spatially interacting motifs.	5	0.51	2004
Improvement of alignment accuracy utilizing sequentially conserved motifs.	11	0.59	2004
PASS2: an automated database of protein alignments organised as structural superfamilies.	24	1.43	2004
DDBASE2.0: updated domain database with improved identification of structural domains.	3	0.40	2003
Supfam - A Database Of Potential Protein Superfamily Relationships Derived By Comparing Sequence-Based And Structure-Based Families: Implications For Structural Genomics And Function Annotation In Genomes	18	1.42	2002
PASS2: a semi-automated database of protein alignments organised as structural superfamilies.	14	1.34	2002