Paper Info
Title
Systems biology model repository for macrophage pathway simulation.
Abstract
The Macrophage Pathway Knowledgebase (MACPAK) is a computational system that allows biomedical researchers to query and study the dynamic behaviors of macrophage molecular pathways. It integrates the knowledge of 230 reviews that were carefully checked by specialists for their accuracy and then converted to 230 dynamic mathematical pathway models. MACPAK comprises a total of 24 009 entities and 12 774 processes and is described in the Cell System Markup Language (CSML), an XML format that runs on the Cell Illustrator platform and can be visualized with a customized Cytoscape for further analysis.MACPAK can be accessed via an interactive web site at http://macpak.csml.org. The CSML pathway models are available under the Creative Commons license.
Year
DOI
Venue
2011
10.1093/bioinformatics/btr173
Bioinformatics
Keywords
Field
DocType
cell system markup language,macrophage pathway knowledgebase,cell illustrator platform,systems biology model repository,macrophage molecular pathway,biomedical researcher,xml format,dynamic behavior,creative commons license,dynamic mathematical pathway model,macrophage pathway simulation,csml pathway model,system biology
XML,Computer science,Systems biology,Software,Bioinformatics,Creative commons,Web site,License,Markup language
Journal
Volume
Issue
ISSN
27
11
1367-4811
Citations 
PageRank 
References 
1
0.36
13
Authors
8
Name
Order
Citations
PageRank
Masao Nagasaki136826.22
Ayumu Saito21077.23
André Fujita322617.14
Georg Tremmel410.70
Kazuko Ueno5311.81
Emi Ikeda6282.62
Euna Jeong71168.51
Satoru Miyano82406250.71