Masao Nagasaki - Citegraph

Author Info

Name	Affiliation	Papers
MASAO NAGASAKI	Human Genome Center, Institute of Medical Science, University of Tokyo, Tokyo, Japan 108-8639	46
Collaborators	Citations	PageRank
90	368	26.22
Referers	Referees	References
788	1055	389

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Publications (46 rows)

Collaborators (90 rows)

Referers (100 rows)

Referees (100 rows)

Title	Citations	PageRank	Year
High-Speed Parameter Search Of Dynamic Biological Pathways From Time-Course Transcriptomic Profiles Using High-Level Petri Net	0	0.34	2021
Security controls in an integrated Biobank to protect privacy in data sharing: rationale and study design.	0	0.34	2017
A Bayesian approach for estimating allele-specific expression from RNA-Seq data with diploid genomes.	1	0.37	2016
CSML2SBML: A novel tool for converting quantitative biological pathway models from CSML into SBML.	0	0.34	2014
An efficient method of exploring simulation models by assimilating literature and biological observational data.	3	0.39	2014
XiP: a computational environment to create, extend and share workflows.	1	0.35	2013
TIGAR: transcript isoform abundance estimation method with gapped alignment of RNA-Seq data by variational Bayesian inference.	10	0.75	2013
ChopSticks: High-resolution analysis of homozygous deletions by exploiting concordant read pairs.	4	0.34	2012
Identifying gene pathways associated with cancer characteristics via sparse statistical methods.	4	0.49	2012
IRView: a database and viewer for protein interacting regions.	2	0.35	2012
SiGN-SSM: open source parallel software for estimating gene networks with state space models.	0	0.34	2011
Hybrid Petri net based modeling for biological pathway simulation	4	0.42	2011
High performance hybrid functional Petri net simulations of biological pathway models on CUDA.	5	0.65	2011
ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information.	17	0.70	2011
MIRACH: efficient model checker for quantitative biological pathway models	3	0.39	2011
Comprehensive pharmacogenomic pathway screening by data assimilation	4	0.43	2011
Ontology-based instance data validation for high-quality curated biological pathways.	13	0.63	2011
Poster: Comprehensive pharmacogenomic pathway screening by data assimilation	0	0.34	2011
Systems biology model repository for macrophage pathway simulation.	1	0.36	2011
CSO validator: improving manual curation workflow for biological pathways.	1	0.37	2011
Model-free unsupervised gene set screening based on information enrichment in expression profiles.	0	0.34	2010
Inferring dynamic gene networks under varying conditions for transcriptomic network comparison.	3	0.43	2010
Identification of Granger Causality between Gene Sets	7	0.65	2010
An efficient biological pathway layout algorithm combining grid-layout and spring embedder for complicated cellular location information.	11	0.40	2010
Cell Illustrator 4.0: A Computational Platform for Systems Biology.	25	1.20	2010
DA 1.0: parameter estimation of biological pathways using data assimilation approach.	7	0.58	2010
The systems approach to the prespore-specific activation of sigma factor SigF in Bacillus subtilis	1	0.34	2010
Time-dependent structural transformation analysis to high-level Petri net model with active state transition diagram.	0	0.34	2010
Simulation-based model checking approach to cell fate specification during Caenorhabditis elegans vulval development by hybrid functional Petri net with extension.	17	0.82	2009
Recursive regularization for inferring gene networks from time-course gene expression profiles.	19	1.06	2009
Gene Networks Viewed through Two Models	0	0.34	2009
Unraveling dynamic activities of autocrine pathways that control drug-response transcriptome networks.	5	0.47	2009
BFL: a node and edge betweenness based fast layout algorithm for large scale networks	18	0.47	2009
Better Decomposition Heuristics for the Maximum-Weight Connected Graph Problem Using Betweenness Centrality	3	0.44	2009
Bayesian learning of biological pathways on genomic data assimilation.	8	1.20	2008
Systematic reconstruction of TRANSPATH data into cell system markup language.	12	0.60	2008
ExonMiner: Web service for analysis of GeneChip Exon array data.	27	0.47	2008
Fast grid layout algorithm for biological networks with sweep calculation.	9	0.55	2008
An efficient grid layout algorithm for biological networks utilizing various biological attributes.	32	0.79	2007
AYUMS: an algorithm for completely automatic quantitation based on LC-MS/MS proteome data and its application to the analysis of signal transduction.	17	0.47	2007
Cell System Ontology: Representation for Modeling, Visualizing, and Simulating Biological Pathways.	9	0.73	2007
Simulation-Based Validation of the p53 Transcriptional Activity with Hybrid Functional Petri Net.	13	0.70	2006
Integrating biopathway databases for large-scale modeling and simulation	2	0.43	2004
Constructing biological pathway models with hybrid functional Petri net.	30	2.12	2004
Towards biopathway modeling and simulation	19	1.22	2003
Recreating Biopathway Databases towards Simulation	1	0.38	2003