Name
Title | ||
|---|---|---|
SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data. |
Abstract | ||
|---|---|---|
We present SVDetect, a program designed to identify genomic structural variations from paired-end and mate-pair next-generation sequencing data produced by the Illumina GA and ABI SOLiD platforms. Applying both sliding-window and clustering strategies, we use anomalously mapped read pairs provided by current short read aligners to localize genomic rearrangements and classify them according to their type, e. g. large insertions-deletions, inversions, duplications and balanced or unbalanced inter-chromosomal translocations. SVDetect outputs predicted structural variants in various file formats for appropriate graphical visualization. |
Year | DOI | Venue |
|---|---|---|
2010 | 10.1093/bioinformatics/btq293 | BIOINFORMATICS |
Keywords | Field | DocType |
paired end sequencing,genomics,cancer,genome | Genome,File format,Data mining,Genomic Structural Variation,Paired-end tag,Visualization,Computer science,Source code,Genomics,Bioinformatics,Cluster analysis | Journal |
Volume | Issue | ISSN |
26 | 15 | 1367-4803 |
Citations | PageRank | References |
20 | 1.47 | 1 |
Authors | ||
8 | ||
Name | Order | Citations | PageRank |
|---|---|---|---|
| Bruno Zeitouni | 1 | 20 | 1.47 |
| Valentina Boeva | 2 | 172 | 14.86 |
| Isabelle Janoueix-Lerosey | 3 | 120 | 10.88 |
| Sophie Loeillet | 4 | 20 | 1.47 |
| Patricia Legoix-né | 5 | 20 | 1.47 |
| Alain Nicolas | 6 | 20 | 1.47 |
| Olivier Delattre | 7 | 127 | 10.75 |
| Emmanuel Barillot | 8 | 950 | 165.00 |