| BIODICA: a computational environment for Independent Component Analysis of omics data | 0 | 0.34 | 2022 |
| Personalized Logical Models To Investigate Cancer Response To Braf Treatments In Melanomas And Colorectal Cancers | 0 | 0.34 | 2021 |
| Exact solving and sensitivity analysis of stochastic continuous time Boolean models. | 0 | 0.34 | 2020 |
| Cd2sbgnml: Bidirectional Conversion Between Celldesigner And Sbgn Formats (Vol 36, Pg 2620, 2019) | 0 | 0.34 | 2020 |
| cd2sbgnml: bidirectional conversion between CellDesigner and SBGN formats. | 0 | 0.34 | 2020 |
| Robust and Scalable Learning of Complex Intrinsic Dataset Geometry via ElPiGraph. | 0 | 0.34 | 2020 |
| Application of Atlas of Cancer Signalling Network in preclinical studies. | 0 | 0.34 | 2019 |
| Community-driven roadmap for integrated disease maps. | 2 | 0.40 | 2019 |
| PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling. | 0 | 0.34 | 2019 |
| Conceptual and computational framework for logical modelling of biological networks deregulated in diseases. | 0 | 0.34 | 2019 |
| Metabolic and signalling network map integration: application to cross-talk studies and omics data analysis in cancer | 0 | 0.34 | 2019 |
| Assessing reproducibility of matrix factorization methods in independent transcriptomes. | 1 | 0.36 | 2019 |
| QuantumClone: clonal assessment of functional mutations in cancer based on a genotype-aware method for clonal reconstruction. | 0 | 0.34 | 2018 |
| Robust and scalable learning of data manifolds with complex topologies via ElPiGraph. | 1 | 0.36 | 2018 |
| Application of Independent Component Analysis to Tumor Transcriptomes Reveals Specific and Reproducible Immune-Related Signals. | 0 | 0.34 | 2018 |
| Signalling maps in cancer research: construction and data analysis. | 0 | 0.34 | 2018 |
| Effective normalization for copy number variation in Hi-C data. | 0 | 0.34 | 2018 |
| NaviCom: a web application to create interactive molecular network portraits using multi-level omics data. | 4 | 0.41 | 2017 |
| MaBoSS 2.0: an environment for stochastic Boolean modeling. | 3 | 0.41 | 2017 |
| SV-Bay: structural variant detection in cancer genomes using a Bayesian approach with correction for GC-content and read mappability. | 4 | 0.50 | 2016 |
| Mathematical Modelling Of Molecular Pathways Enabling Tumour Cell Invasion And Migration | 7 | 0.61 | 2015 |
| DeDaL: Cytoscape 3 app for producing and morphing data-driven and structure-driven network layouts | 3 | 0.41 | 2015 |
| NaviCell Web Service for network-based data visualization. | 7 | 0.44 | 2015 |
| Multi-factor data normalization enables the detection of copy number aberrations in amplicon sequencing data. | 4 | 0.48 | 2014 |
| BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats. | 15 | 0.61 | 2013 |
| OCSANA: optimal combinations of interventions from network analysis. | 6 | 0.51 | 2013 |
| Synthetic lethality between gene defects affecting a single non-essential molecular pathway with reversible steps. | 0 | 0.34 | 2013 |
| HMCan: a method for detecting chromatin modifications in cancer samples using ChIP-seq data. | 6 | 0.53 | 2013 |
| NaviCell: a web-based environment for navigation, curation and maintenance of large molecular interaction maps. | 14 | 0.63 | 2013 |
| ncPRO-seq: a tool for annotation and profiling of ncRNAs in sRNA-seq data. | 4 | 0.44 | 2012 |
| Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data. | 28 | 2.38 | 2012 |
| Continuous time Boolean modeling for biological signaling: application of Gillespie algorithm. | 10 | 0.66 | 2012 |
| Identification of shortened 3' untranslated regions from expression arrays. | 0 | 0.34 | 2012 |
| HiTC: exploration of high-throughput 'C' experiments. | 10 | 0.93 | 2012 |
| Nebula--a web-server for advanced ChIP-seq data analysis. | 5 | 0.51 | 2012 |
| Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization. | 31 | 3.34 | 2011 |
| Mathematical Modelling Of Cell-Fate Decision In Response To Death Receptor Engagement | 35 | 1.89 | 2010 |
| Dynamical modeling of microRNA action on the protein translation process. | 4 | 0.69 | 2010 |
| SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data. | 20 | 1.47 | 2010 |
| Girafe--an R/Bioconductor package for functional exploration of aligned next-generation sequencing reads. | 3 | 0.60 | 2010 |
| Method for Relating Inter-patient Gene Copy Numbers Variations with Gene Expression via Gene Influence Networks | 0 | 0.34 | 2009 |
| Regulatory network reconstruction using an integral additive model with flexible kernel functions. | 6 | 0.39 | 2008 |
| ITALICS: an algorithm for normalization and DNA copy number calling for Affymetrix SNP arrays. | 7 | 0.66 | 2008 |
| Classification of arrayCGH data using fused SVM. | 28 | 1.80 | 2008 |
| BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks. | 25 | 1.63 | 2008 |
| LICORN: learning cooperative regulation networks from gene expression data. | 12 | 0.78 | 2007 |
| Software package for automatic microarray image analysis (MAIA). | 5 | 0.55 | 2007 |
| Classification of microarray data using gene networks. | 93 | 5.61 | 2007 |
| CAPweb: a bioinformatics CGH array Analysis Platform. | 10 | 0.93 | 2006 |
| Ittaca: A New Database For Integrated Tumor Transcriptome Array And Clinical Data Analysis | 7 | 0.89 | 2006 |
