Name
Title | ||
|---|---|---|
Girafe--an R/Bioconductor package for functional exploration of aligned next-generation sequencing reads. |
Abstract | ||
|---|---|---|
The R/Bioconductor package girafe facilitates the functional exploration of alignments of sequence reads from next-generation sequencing data to a genome. It allows users to investigate the genomic intervals together with the aligned reads and to work with, visualise and export these intervals. Moreover, the package operates within and extends the ever-growing Bioconductor framework and thus enables users to leverage a multitude of methods for their data in order to answer specific research questions.The R package girafe is available from the Bioconductor web site: http://www.bioconductor.org/packages/release/bioc/html/girafe.html. An extensive vignette and the Bioconductor mailing lists provide additional documentation and help for using the package. |
Year | DOI | Venue |
|---|---|---|
2010 | 10.1093/bioinformatics/btq531 | Bioinformatics |
Keywords | Field | DocType |
functional exploration,supplementary data,r package girafe,next-generation sequencing data,bioinformatics online,extensive vignette,additional documentation,bioconductor package girafe,bioconductor mailing list,ever-growing bioconductor framework,bioconductor web site,genomics,sequence alignment,genome,next generation sequencing | Additional documentation,Data mining,Computer science,Bioconductor,Genomics,Software,DNA sequencing,Bioinformatics,Web site,R package | Journal |
Volume | Issue | ISSN |
26 | 22 | 1367-4811 |
Citations | PageRank | References |
3 | 0.60 | 3 |
Authors | ||
5 | ||
Name | Order | Citations | PageRank |
|---|---|---|---|
| Joern Toedling | 1 | 112 | 11.16 |
| Constance Ciaudo | 2 | 7 | 1.04 |
| Olivier Voinnet | 3 | 7 | 1.04 |
| Edith Heard | 4 | 13 | 1.74 |
| Emmanuel Barillot | 5 | 950 | 165.00 |