Name
Title | ||
|---|---|---|
Poster: In silico microarray algorithm: Accurate and fast taxonomic profiling from short read sequences |
Abstract | ||
|---|---|---|
We here propose a novel algorithm that can accurately estimate taxonomic composition of microbial communities from massive amount of short read sequences (60 -- 120 bp). Our accuracy evaluation based on simulated datasets demonstrated that our method achieves much higher accuracies than previously proposed methods including Taxy, Qin's method and RDPClassifier. The source code is freely available under GNU Public Licence (GPL) from http://ism.dna.bio.keio.ac.jp. |
Year | DOI | Venue |
|---|---|---|
2012 | 10.1109/ICCABS.2012.6182660 | ICCABS |
Keywords | Field | DocType |
short read sequence,simulated datasets,accuracy evaluation,taxonomic composition,source code,microbial community,silico microarray algorithm,gnu public licence,taxonomic profiling,novel algorithm,massive amount,higher accuracy,metagenomics,next generation sequencing,bioinformatics,genomics | Data mining,Biology,Source code,Profiling (computer programming),Algorithm,Genomics bioinformatics,Genomics,Metagenomics,Bioinformatics,In silico | Conference |
Citations | PageRank | References |
0 | 0.34 | 1 |
Authors | ||
3 | ||
Name | Order | Citations | PageRank |
|---|---|---|---|
| Tomoya Tagami | 1 | 0 | 0.34 |
| Tsuyoshi Hachiya | 2 | 66 | 3.64 |
| Yasubumi Sakakibara | 3 | 769 | 62.91 |