Yasubumi Sakakibara

Author Info

Name	Affiliation	Papers
YASUBUMI SAKAKIBARA	Dept. of Biosciences and Informatics, CREST, JST (Japan Science and Technology Corporation), Keio University, Chofu, Japan	68
Collaborators	Citations	PageRank
87	769	62.91
Referers	Referees	References
1398	1025	578

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Publications (68 rows)

Collaborators (87 rows)

Referers (100 rows)

Referees (100 rows)

Title	Citations	PageRank	Year
Graph Kernels Encoding Features of All Subgraphs by Quantum Superposition	0	0.34	2022
Metavelvet-Dl: A Metavelvet Deep Learning Extension For De Novo Metagenome Assembly	0	0.34	2021
Comprehensive evaluation of non-hybrid genome assembly tools for third-generation PacBio long-read sequence data.	1	0.36	2019
Convolutional neural network based on SMILES representation of compounds for detecting chemical motif.	1	0.35	2018
A max-margin training of RNA secondary structure prediction integrated with the thermodynamic model.	1	0.43	2018
Convolutional neural networks for classification of alignments of non-coding RNA sequences.	4	0.42	2018
SHARAKU: an algorithm for aligning and clustering read mapping profiles of deep sequencing in non-coding RNA processing.	1	0.37	2016
A machine learning based approach to de novo sequencing of glycans from tandem mass spectrometry spectrum	1	0.36	2015
SAMSCOPE: an OpenGL-based real-time interactive scale-free SAM viewer.	2	0.55	2012
DAFS: simultaneous aligning and folding of RNA sequences via dual decomposition.	11	0.56	2012
COPICAT: a software system for predicting interactions between proteins and chemical compounds.	5	0.47	2012
Poster: In silico microarray algorithm: Accurate and fast taxonomic profiling from short read sequences	0	0.34	2012
An efficient algorithm for de novo predictions of biochemical pathways between chemical compounds.	13	0.52	2012
MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads.	39	1.68	2011
Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures.	15	0.54	2011
Robust and accurate prediction of noncoding RNAs from aligned sequences.	1	0.36	2010
A Non-parametric Bayesian Approach for Predicting RNA Secondary Structures	3	0.38	2010
Operon Structure Optimization by Random Self-assembly	0	0.34	2010
Improvement of structure conservation index with centroid estimators.	1	0.35	2010
Sequence and Structural Analyses for Functional Non-coding RNAs	0	0.34	2009
Integrating Statistical Predictions And Experimental Verifications For Enhancing Protein-Chemical Interaction Predictions In Virtual Screening	11	0.65	2009
Accurate identification of orthologous segments among multiple genomes.	9	0.62	2009
Software.ncrna.org: web servers for analyses of RNA sequences.	1	0.36	2008
Bio-Molecular Computing of Finite-State Machine.	1	0.37	2008
Directed acyclic graph kernels for structural RNA analysis.	30	0.48	2008
Implementing in vivo Cellular Automata using Toggle Switch and Inter-Bacteria Communication Mechanism.	0	0.34	2007
Statistical prediction of protein chemical interactions based on chemical structure and mass spectrometry data.	30	1.51	2007
Stem kernels for RNA sequence analyses	0	0.34	2007
Guest editorial to the special issue on grammatical inference	1	0.36	2007
Discriminative Detection of Cis-Acting Regulatory Variation From Location Data	1	0.39	2006
Grammatical Inference: Algorithms and Applications, 8th International Colloquium, ICGI 2006, Tokyo, Japan, September 20-22, 2006, Proceedings	32	3.06	2006
Intensive in vitro experiments of implementing and executing finite automata in test tube	3	0.59	2005
Development of an in vivo computer based on escherichia coli	7	1.05	2005
RNA secondary structural alignment with conditional random fields.	37	1.63	2005
Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.	37	1.66	2005
Discriminative discovery of transcription factor binding sites from location data.	0	0.34	2005
Learning context-free grammars using tabular representations	30	1.51	2005
Grammatical Inference: Algorithms and Applications, 7th International Colloquium, ICGI 2004, Athens, Greece, October 11-13, 2004, Proceedings	5	0.63	2004
A DNA-based computational model using a specific type of restriction enzymes	2	0.57	2004
An Algorithm for Testing Structure Freeness of Biomolecular Sequences	2	0.42	2004
Pair hidden Markov models on tree structures.	20	1.17	2003
DNA-based algorithms for learning Boolean formulae	1	0.36	2003
A Magic Pot: Self-assembly Computation Revisited	8	1.40	2002
Multiple splicing systems and the universal computability	1	0.37	2001
Sticker systems with complex structures	3	0.55	2001
Population Computation and Majority Inference in Test Tube	1	0.37	2001
Approximate identification of finite elasticity	0	0.34	2001
Learning Context-Free Grammars from Partially Structured Examples	27	1.23	2000
Solving Computational Learning Problems of Boolean Formulae on DNA Computers	5	0.67	2000
GA-based Learning of Context-Free Grammars using Tabular Representations	15	1.18	1999

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