Paper Info
Title
Cell Illustrator 4.0: A Computational Platform for Systems Biology.
Abstract
Cell Illustrator is a software platform for Systems Biology that uses the concept of Petri net for modeling and simulating biopathways. It is intended for biological scientists working at bench. The latest version of Cell Illustrator 4.0 uses Java Web Start technology and is enhanced with new capabilities, including: automatic graph grid layout algorithms using ontology information; tools using Cell System Markup Language (CSML) 3.0 and Cell System Ontology 3.0; parameter search module; high-performance simulation module; CSML database management system; conversion from CSML model to programming languages (FORTRAN, C, C++, Java, Python and Perl); import from SBML, CellML, and BioPAX; and, export to SVG and HTML. Cell Illustrator employs an extension of hybrid Petri net in an object-oriented style so that biopathway models can include objects such as DNA sequence, molecular density, 3D localization information, transcription with frame-shift, translation with codon table, as well as biochemical reactions.
Year
DOI
Venue
2010
10.3233/ISB-2010-0415
In Silico Biology
Field
DocType
Volume
Biology,Systems biology,Computational biology
Journal
10
Issue
ISSN
Citations 
1-2
0926-9630
25
PageRank 
References 
Authors
1.20
0
7
Name
Order
Citations
PageRank
Masao Nagasaki136826.22
Ayumu Saito21077.23
Euna Jeong31168.51
Chen Li4907.16
Kaname Kojima515211.12
Emi Ikeda6282.62
Satoru Miyano72406250.71